BAC Information

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BAC

Clone NameMSMg01-300J16
Chromosome14 (Build37)
Map Location 98,734,069 - 98,734,383
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668659, Dach1
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300J16.T7 (MSMg01no300_j16.b1)MSMg01-300J16.TJ (MSMg01no300_j16.g1)
ACCAG427048AG427049
length750745
length of high quality
(start - end)
320 (41 - 360)193 (121 - 313)
definitionCHROMAT_FILE: MSMg01no300_j16.b1 PHD_FILE: MSMg01no300_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:48 2005CHROMAT_FILE: MSMg01no300_j16.g1 PHD_FILE: MSMg01no300_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTCACGTCCAGAAAGAAAAAGCGACAGGAGTCGAGCTCTCCACGGAGAA
AGAGTAGAATTCTATATGTACCCATGAATTCATTCAAAGTTCATAATGAA
TGATTTATTTAACCCAGTCCTTACCAAGCTGTAGATTGGAACCCCTTTGC
CAAACCTCTATCTATACTACATTACAGTTCATAACAGTAGGAAAACTACA
GTTAGGAAGAATCAACAAAAATAACTTTATGGTTGGGGGCCACCACTGTA
TGGGGAACTATATTAAAGGGTCACAGCCTTATGAACGTTGAGAGCCACTA
TTTAAACCACTGTATTTATCAATCCCTACTCTAACATTCAACTGTGTTCC
TCAAGAAAATTGGTCAGTAGTCTTTCATAACACAAAAACCAAAAGAGGCT
AAGGGCACGTAACTGATACGTGTGACATGATAGCCTGAATTGGATTCTGC
AGCAGAAAGAAGGTGGAGAAAATTTGGTGGCACACAAATAAGAGTTTTGT
TACAATTATTAGTTTTACATAATATCATAGCTTTGACAAAGGTATCACAG
AAGTATGTTTGCAGGCTAGAAAACAGAATATTAGGCTTACAGGTGCTCCC
AGTACTAGTGTTCTAATGTTTCTGTAAATCTACATTTTCTAAAATATAAG
CTTTATGTCAGTATGTGAGGGTGGACTGAAGAAATGGTTCCTAGTGAAAA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACCTCCTTAATCATCAGGGAAATGGAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGTTAAGATCAAAAAT
TCAGGTGACAGCAAATGCTGGCATGGATGTGCAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGCACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAATTGGACACAGCACTACCGGAGGATCCCGCAATA
CCTCTCCTGTTTTTATATCCCCCACCACCCCCCAACTGGCAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGACTTATATATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAATAGATGACTGGATACCGAAAATGCGGTA
CATCTACACAATGGAGCACTACTCACTTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCTAATGGATGGATCTGGAGGGCATCATCCTGATTGAGGTA
ACACATTCACAAAGGAACTTACACAATATGTACTCACTGATAATTGGATA
TTACCCCCTAACCTAGGATATCCACATATAAGACTACATTTCCTAAAATT
ATATAACTCACGACACATGACGACTGAATTGCGGACACTATGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_j16.b1 MSMg01no300_j16.b1 CHROMAT_FILE:
MSMg01no300_j16.b1 PHD_FILE: MSMg01no300_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:48 2005
         (320 letters)



>mm_chr14_98733865_98734583
          Length = 719

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcacgtccagaaagaaaaagcgacaggagtcgagctctccacggagaaagag 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattccttcacgtccagaaagaaaaagcgacaggagtcgagctctccacgg-gaaagag 263

                                                                       
Query: 65  tagaattctatatgtacccatgaattcattcaaagttcataatgaatgatttatttaacc 124
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagaattctatatgtaaagatgaattcattcaaagttcataatgaatgatttatttaacc 323

                                                                       
Query: 125 cagtccttaccaagctgtagattggaacccctttgccaaacctctatctatactacatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtccttaccaagctgtagattggaacccctttgccaaacctctatctatactacatta 383

                                                                       
Query: 185 cagttcataacagtaggaaaactacagttaggaagaatcaacaaaaataactttatggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagttcataacagtaggaaaactacagttaggaagaatcaacaaaaataactttatggtt 443

                                                                       
Query: 245 gggggccaccactgtatggggaactatattaaagggtcacagccttatgaacgttgagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 gggggccaccactgtatggggaactatattaaagggtcacagccttatgaaggttgagag 503

                           
Query: 305 ccactatttaaaccac 320
           ||||||||||||||||
Sbjct: 504 ccactatttaaaccac 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)