BAC Information

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BAC

Clone NameMSMg01-300O08
Chromosome14 (Build37)
Map Location 52,592,158 - 52,592,394
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
Downstream geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300O08.T7 (MSMg01no300_o08.b1)MSMg01-300O08.TJ (MSMg01no300_o08.g1)
ACCAG427252AG427253
length722722
length of high quality
(start - end)		244 (76 - 319)238 (128 - 365)
definitionCHROMAT_FILE: MSMg01no300_o08.b1 PHD_FILE: MSMg01no300_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:09 2005CHROMAT_FILE: MSMg01no300_o08.g1 PHD_FILE: MSMg01no300_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCC
GCGGAATTCTAAATTTCGAAAAAAGTGAGTGACAAAAGCAATGTATGTTG
AGCACTTTAGTGTACAGTTTACAGATCTATGAGTGTTTAAATATGGTAAA
CCTCTAGGACATATTTTATGAAAGCAGCAGTACACTCTTACGTCCCCTGT
GTGACCTCACTTAACTTTGCCAGCTTTGTGGGCTGTTGTACTGCTAGGCT
GAGAACAATCGGAAACTCCTGGAATAGATGTCTCATGTCTCATTGCTTTT
TCCAGGCTTAGGACACTATTTTTTATTAGGTTTGATGGAACATTAACAAA
ACCAGGGTCTTTTTTTTTTTCCCCCGCCCACTACCATGTTCCAGGACAGT
TCTATATGAACTTCTCAAAGACAGAAAAAATGAAGCAAGAGGAAAGCCAA
GCAGAAGGTATCCATTTCCAGCACCCTCAACACATTTTCACAGGACTGGG
TAAGTTGGCTTTGGTATAAGAAGAGCTGTCCTGATATAGCCGCCCCTCAT
CTGATCAGAGAATAATAGTTCATGACTTTTGGTGAAATATTGTGCGTGTG
TGGTTCGTATAAGCTACATGAAATGTGTATAACTACAAACTATATTAATA
CCAATTTACACTTAAAGCATTTAACAAAATGGGGCAAACTATATTGTTCT
ACTAACTCCACTATGCATACTC

CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACAC
AGAGAAACCTTGTCTAGAATAACCACCCAAAAAAAAAAAAAAAAAAAAAA
AACCAAAACAAAAAAACAACCAAGTGTTGCGAAATTTTTGTATTCCCTGC
CAATTATACTATAGGATATTTTAGGTACTAATTATATCAAGAAACATAAA
TACTTAATGTCATCATGGATGTTGTTGTTATTAAATTTTGATATCTGTTG
TAAACTCTAGATAAGAAAAATTAATCCAAATCTCTAGGTAGAGTAAATGG
AGTTAAATTTACTTTATTTTCAACCCACCCTTCGGTTTTATTCAAATTAT
ACTGAGTAAGAGAATATGAATGTGTGTGCAAGTTTATAAAGAAGATAAAA
AACTTGAATATTTCTAATATTAATTTGAATAATGTTGGTTTTTAGGGTAA
GCAAAGCATCATAACAAAAGGGTATGACCAAGTGAAAGGGCACAATATTT
TCATTTGTAACTTGTTAAAACCAAGATTAATATTATTTTATTTTGGGCAG
CGGCGGCAAATGTCTTTAACGTCATTACTTTGGAGGCAGGGACTGGTAAC
GAGTTTGAATCCAGCCTAACCCACCCAGTGATTTCCATATAAGCCATCAT
TGTTTGCTAAAATTTTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_o08.g1 MSMg01no300_o08.g1 CHROMAT_FILE:
MSMg01no300_o08.g1 PHD_FILE: MSMg01no300_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:09 2005
         (238 letters)



>mm_chr14_52591919_52592556
          Length = 638

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaaaaaaaaaaaaaaaaaaaaaaaccaaaacaaaaaaacaaccaagtgttgcgaaatttt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 476 aaaaaaaaaaaaaaaaaaaaaaaaccaaaacaaaaaaacaaccaagtgttgcgtaatttt 417

                                                                       
Query: 62  tgtattccctgccaattatactataggatattttaggtactaattatatcaagaaacata 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgtattccctgccaattatactataggatattttaggtactaattatatcaagaaacata 357

                                                                       
Query: 122 aatacttaatgtcatcatggatgttgttgttattaaattttgatatctgttgtaaactct 181
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 356 aatacttaatgtcatcatggatgttgttgttattagattttgatatctgttgtaaactct 297

                                                                    
Query: 182 agataagaaaaattaatccaaatctctaggtagagtaaatggagttaaatttacttt 238
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agataagaagaattaatccaaatctctaggtagagtaaatggagttaaatttacttt 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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