BAC Information

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BAC

Clone NameMSMg01-301G19
Chromosome14 (Build37)
Map Location 70,892,644 - 70,892,882
singlet/doubletsinglet
Overlap geneBmp1
Upstream geneSlc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip
Downstream geneSftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301G19.T7 (MSMg01no301_g19.b1)MSMg01-301G19.TJ (MSMg01no301_g19.g1)
ACCAG427630AG427631
length795813
length of high quality
(start - end)
---239 (66 - 304)
definitionCHROMAT_FILE: MSMg01no301_g19.b1 PHD_FILE: MSMg01no301_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:49 2005CHROMAT_FILE: MSMg01no301_g19.g1 PHD_FILE: MSMg01no301_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATACCACCCTATGCACTTCTTA
CCCCCCCGTACCGCCATTTCCCTATTTCCCAGCAGTTTACCGCTTACATG
CTATTCATACATCTCGCGTGTATTATTATTATCGCGGATTAGACCCCTCT
TTTATTTTTGCAAGACCCCCGGTTCATTTACTCACCTTGTTTTTCCGAAT
CCCTATCACCGTCCAATTATTAACACCCGTATTATCCTGCGGCTCAACTT
AACACCTTTATATTTCTCCCGCTCTGCAGCTACTCTACCCGTCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCCCAGAGGCGGCTGTCGGTGGAGACGATGGGCTCGG
GGAGTTTGCCCCCACAGAACCGGCCTGCAGACAGTAAAGACAAATGATGC
TCGAGTTCCGAGTGTCCTCAGATAAGCCCCAACTTTCTAGGAGAAAGACT
CAGAAACCCTTTAAGAGACAGGGCAGGAGCTGAAGGACATGTGTGTTTTA
CTGGTTTGCTTTGGTATTGGGGGGGGGACGACACGTGTTTGGGGGATGTT
TTTGCTATTTGTTTTTTTTATACATCTCTCCATCTTGGCCAGCCTTTTTG
TTTCTTTCTCTTTTCCCTTTCCTCTCACCCCTTTTTTTTTACATATTACT
CCACTGATTCCCCCCTGTTTTTTGCTTTTGCCTCCTTCTCCTCCCCCCCT
TTTTTCCCCTCTTTTCTTCGTTCCTTGCATGTCTCCGTTTTATCTTCTTA
TTCCTCCCCTTTTCCCCCCCTTGTTCTCTTTCTCTTGTCTTCTGCGTCTA
TACCCGTTTCGCTCCCTCCTCTTTTCTCTCTTTTCCCCTCCCTTTCTGCC
TCTTTCCCTTATTTCATCTTCCTTTCTCCTCCTCCATTTTTCTCCCTTCT
CCCCGTTTTCTACTATTATTTCTGCTTTCTCCTTCCCCTTTTATTTCTCC
TTTTCCTCTCTTCTTCGTCGCTATCTCTCTTTTTTTTTCTTAATTTCTCC
CGCCTTATTTCCTCCTCCTTTCTTTTTCTTATGCCCGTACCTCCTCCGTT
TCCGTTGTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_g19.g1 MSMg01no301_g19.g1 CHROMAT_FILE:
MSMg01no301_g19.g1 PHD_FILE: MSMg01no301_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:49 2005
         (239 letters)



>mm_chr14_70892444_70893082
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagaggcggctgtcggtggagacgatgggctcggggagtttgcccccacagaaccggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagaggcggctgtcggtggagacgatgggctcggggagtttgcccccacagaaccggcc 260

                                                                       
Query: 61  tgcagacagtaaagacaaatgatgctcgagttccgagtgtcctcagataagccccaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagacagtaaagacaaatgatgctcgagttccgagtgtcctcagataagccccaactt 320

                                                                       
Query: 121 tctaggagaaagactcagaaaccctttaagagacagggcaggagctgaaggacatgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaggagaaagactcagaaaccctttaagagacagggcaggagctgaaggacatgtgtg 380

                                                                      
Query: 181 ttttactggtttgctttggtattgggggggggacgacacgtgtttgggggatgtttttg 239
           ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 381 ttttactggtttgctttggtattggggggggggggacacgtgtttgggggatgtttttg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)