BAC Information

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BAC

Clone NameMSMg01-301L16
Chromosome14 (Build37)
Map Location 56,379,594 - 56,380,145
singlet/doubletsinglet
Overlap geneCideb
Upstream geneSlc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik
Downstream geneLtb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301L16.T7 (MSMg01no301_l16.b1)MSMg01-301L16.TJ (MSMg01no301_l16.g1)
ACCAG427838AG427839
length723719
length of high quality
(start - end)		492 (42 - 533)549 (73 - 621)
definitionCHROMAT_FILE: MSMg01no301_l16.b1 PHD_FILE: MSMg01no301_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:12 2005CHROMAT_FILE: MSMg01no301_l16.g1 PHD_FILE: MSMg01no301_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGTTAGTTCTTATCAGCTTTATACAAACTAGTCATCTGGGAAGAGAGA
ACTTCAGTTAAGAAATTGCCTCCATCAGATTGACTTGAAGGTATGTCTGT
GGGACTTTGCCTTCATTGATACATGATGGGGGAGGGCCCTGCCCATTTTG
AGTGATGCCATCCCTAGGCAGGTGGCCCTGGACTATATAAGAAGCAGGCT
AAGCAAGCCATGAGAAGCAAGCCAGTAAGCAACACTCCTCCATGGCCTCT
GCATCAGCTCCTGCCTCCAGGTTCCTGCCTTGACTTTCCATCCTGGCTTC
CTTCAGTGACAGACTATGACCTTTAAGCTGAGCTGAAATAAACATTTTCT
CCCAAAAATTGGTCTTGATCAGTGTTTATCTCAGCAAAAGAACCCAATTT
AGGACAGTTAGTTCTTCAAGTTAGCCCTTTGTAAGTTGTTGATTTTTGAT
TTTGTTTTTGTTTTGTGTTGTGTTGGTTTGTATTGTTTTGNNNNNNNNNT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTACC
TTTTTTTTTTTTNTTTTTTTTNTCTGTTTTTTTTTTTTTTTTTTTTTTTT
TTTTCCCCNTTCCCTTTTTCCCTTTTTTTCCCATTTGTCTCCGTTCTAAC
CTTTGACATATAAACCCTTTTCT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAATAGTTATGAGCTGCCTAACACGGT
GCTGGAAAACAAACCCAGGCCCTCTGGCTGAGCAGCAAATGTTCTTAGCC
ACTGAGCCATTTCTTCAGCCTTCTTCCTGATCTTTTTTTTTTCTTCCTGA
TCTTAATATGTTCCGTCCCTCCCCAGTGTTATGATCTCCACCCCTAAACC
AGGTTGTAAGCTCTTATTACCCAAATGCATAGCCTTAGGCCTGAGCATCA
TGTATTACACTGAAATGTCACCGGCAACTGAGTAATAGCTGTAGGGTGGA
GGGGCTCTGACAGGCCCCCAAAGAAACTGAAGCAGAAGAGGACACTCCGC
AGGAACGGAAGGTTGAAACAAGCAAAAGGAGAGCAGCTGGGAGAGCGCCT
TGTTTGGGTTACTTCTCTGTTGCCTGCAAGTCATGGAGGCTAGATAGAAC
ATAAACATTGCAGGAGGTGGGCTGAAAGGACTGGGGCCAGAGGTGGGGAG
ATGTGGGAGCAGTCGTTAGCAGGTACAACTGCTCTTCTCCGCAGGCTGAG
CCTTCTCTGCACCTCAGCCTTATCCTGCTTCCTGGGGAGGCTGGCCTCCA
CATGCCTGGGCCTGTCAGTGATGGGAAGGAGTAGGATGATGGAGGCCCCT
CGGTGAGCACCATCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_l16.g1 MSMg01no301_l16.g1 CHROMAT_FILE:
MSMg01no301_l16.g1 PHD_FILE: MSMg01no301_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:12 2005
         (549 letters)



>mm_chr14_56379394_56380345
          Length = 952

 Score = 1036 bits (536), Expect = 0.0
 Identities = 547/552 (99%), Gaps = 3/552 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatagttatgagctgcctaacacggtgctggaaaacaaacccaggccctctggctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 caaatagttatgagctgcctaacacggtgctggaaaacaaacccaggtcctctggctgag 260

                                                                       
Query: 61  cagcaaatgttcttagccactgagccatttcttcagccttcttcctgatctttttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcaaatgttcttagccactgagccatttcttcagccttcttcctgatctttttttttt 320

                                                                       
Query: 121 ---cttcctgatcttaatatgttccgtccctccccagtgttatgatctccacccctaaac 177
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttcctgatcttaatatgttccgtccctccccagtgttatgatctccacccctaaac 380

                                                                       
Query: 178 caggttgtaagctcttattacccaaatgcatagccttaggcctgagcatcatgtattaca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggttgtaagctcttattacccaaatgcatagccttaggcctgagcatcatgtattaca 440

                                                                       
Query: 238 ctgaaatgtcaccggcaactgagtaatagctgtagggtggaggggctctgacaggccccc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaaatgtcaccggcaactgagtaatagctgtagggtggaggggctctgacaggccccc 500

                                                                       
Query: 298 aaagaaactgaagcagaagaggacactccgcaggaacggaaggttgaaacaagcaaaagg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagaaactgaagcagaagaggacactccgcaggaacggaaggttgaaacaagcaaaagg 560

                                                                       
Query: 358 agagcagctgggagagcgccttgtttgggttacttctctgttgcctgcaagtcatggagg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 agagcagctgggagagcgccttgtttgggttacttctctgttgcctgcaagccatggagg 620

                                                                       
Query: 418 ctagatagaacataaacattgcaggaggtgggctgaaaggactggggccagaggtgggga 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagatagaacataaacattgcaggaggtgggctgaaaggactggggccagaggtgggga 680

                                                                       
Query: 478 gatgtgggagcagtcgttagcaggtacaactgctcttctccgcaggctgagccttctctg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatgtgggagcagtcgttagcaggtacaactgctcttctccgcaggctgagccttctctg 740

                       
Query: 538 cacctcagcctt 549
           ||||||||||||
Sbjct: 741 cacctcagcctt 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 952
Length adjustment: 10
Effective length of query: 539
Effective length of database: 942
Effective search space:   507738
Effective search space used:   507738
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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