BAC Information

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BAC

Clone NameMSMg01-302F09
Chromosome14 (Build37)
Map Location 10,660,594 - 10,661,051
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100041948
Downstream geneLOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302F09.T7 (MSMg01no302_f09.b1)MSMg01-302F09.TJ (MSMg01no302_f09.g1)
ACCAG428261AG428262
length753736
length of high quality
(start - end)
---458 (70 - 527)
definitionCHROMAT_FILE: MSMg01no302_f09.b1 PHD_FILE: MSMg01no302_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:57 2005CHROMAT_FILE: MSMg01no302_f09.g1 PHD_FILE: MSMg01no302_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAAGTTTTTATCATGTTTACTTTCTTCGAACCCAAATTTTCTTTTGGC
CCATGATTTTATTGCAAATCTCGTATCAGACCATCGATTGACGTCTTCTT
TAACTACTTTATTTGGTTCAAGAATATCTTCCACATCCTGGGGGCCGCAT
TCTCGACATTTTTCCACTTCTGCCTTATATTGTTGCCTGTAATCTCGAAA
TGAATAAAGTTCTTTTGCAGACAGGCCTCGCTCTTGCGTCTCGTTGCCGG
CCCACGTCGTGCTTTCTCAATGCTCTTCTGTGAGTTAGCACGCTTCTGGC
TTCGATCTGTTAGTAGATCCCTAAGACAANGCCCCTTGGGTTTTCTGTGA
TGAAGAGTCTTGATCGGACGAGAACAATAAAAAAAGAACGTCGCGGTGGC
GCTGGCAATCAACCATACTGTCATCCTGTATGCTCTGACGGACTTCTTCA
CTGACATGGAGACCATGCCTTTCACTCTGTAAGCAAGCTTCTGCAGGACT
TTCAGGTGAACAACATCTTCTGTCTCGAAAGATATCTCCATCATCCCTGG
TGCTCTTTTTCGTCCCCGCTCAGTCCTCGTTTGCTTTGACTCGCTGTCCT
GAGAGGGGACTCCCTGATTTGAATCTTGGAGCCAAACAACCGGCGTCGGT
TGGATAAATTACAAGGAAGGAAGCCTGCCTTTCCACCATATTGGTGGGGA
GGG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXGTGCCCAGAGGCACTGCAGACTTACCTGTTC
GCACTCTGACAGCTGAGTGCCGGATCAAGCTTGAAGACATGAAAAGGACT
ACATTAATTCACCCACATGGGGACTGAACTGGCATCAGTGACTTCAAATG
TGCCCAGCAGAGACCAGATGATCTCCATTTCAAACACAGAGTGCTCTGCC
TTCCAAACTGGACAGAATTCCATGTTATCTACATTGGTCATATAAATGGG
CTGCTTTTCAAAGCTGTAGTCTTAGAGGGTTATCTGTAAAATCTGTGTCT
TATATGTTGCTTTAAATAAACTTTTGCACTCACATAAAAAAATAAACCAT
ACAACTTGAGAAAAGACTTAGGTATAACTATTGTGAAAACTACCCATTAT
GAGCAGATATAGCATTTGTTATGCTTATTTGAATTCCCATAGTTTGTAGT
TAGCTAAACAGTACACCATCTGTTATGGATATGTCTGTCAATGGCATTTC
CCATCTCAAGGAATAAGGATCACTAAGCTATGAGGTCTCTAAGTTAGGAC
TTAAGTACCCAGAAAAATAAATATCTTTGACATTGGAAAAATTCAATTTA
AAAAAACAAATGTGGTGGATACCCCTTAAAAGGCGTTATTGCCTTGAATT
TTTTTTTTATTACTAAGAAATTGTTGAATAATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_f09.g1 MSMg01no302_f09.g1 CHROMAT_FILE:
MSMg01no302_f09.g1 PHD_FILE: MSMg01no302_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:57 2005
         (458 letters)



>mm_chr14_10660394_10661251
          Length = 858

 Score =  847 bits (438), Expect = 0.0
 Identities = 453/458 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcccagaggcactgcagacttacctgttcgcactctgacagctgagtgccggatcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 gtgcccagaggcactgcagacttacctgttcgcactctgacagctgagtggtggatcaag 260

                                                                       
Query: 61  cttgaagacatgaaaaggactacattaattcacccacatggggactgaactggcatcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaagacatgaaaaggactacattaattcacccacatggggactgaactggcatcagt 320

                                                                       
Query: 121 gacttcaaatgtgcccagcagagaccagatgatctccatttcaaacacagagtgctctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttcaaatgtgcccagcagagaccagatgatctccatttcaaacacagagtgctctgc 380

                                                                       
Query: 181 cttccaaactggacagaattccatgttatctacattggtcatataaatgggctgcttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttccaaactggacagaattccatgttatctacattggtcatataaatgggctgcttttc 440

                                                                       
Query: 241 aaagctgtagtcttagagggttatctgtaaaatctgtgtcttatatgttgctttaaataa 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagctgtagtcacagagggttatctgtaaaatctgtgtcttatatgttgctttaaataa 500

                                                                       
Query: 301 acttttgcactcacataaaaaaataaaccatacaacttgagaaaagacttaggtataact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 acttttgcactcacataaaaaaataaaccatacaacttgagaaaagacttacgtataact 560

                                                                       
Query: 361 attgtgaaaactacccattatgagcagatatagcatttgttatgcttatttgaattccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgtgaaaactacccattatgagcagatatagcatttgttatgcttatttgaattccca 620

                                                 
Query: 421 tagtttgtagttagctaaacagtacaccatctgttatg 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtttgtagttagctaaacagtacaccatctgttatg 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)