BAC Information

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BAC

Clone NameMSMg01-303H10
Chromosome14 (Build37)
Map Location 46,523,848 - 46,681,687
singlet/doubletdoublet
Overlap geneLOC100041685, LOC625377
Upstream genePtger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834
Downstream geneLOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303H10.T7 (MSMg01no303_h10.b1)MSMg01-303H10.TJ (MSMg01no303_h10.g1)
ACCAG429050AG429051
length721720
length of high quality
(start - end)		669 (51 - 719)645 (76 - 720)
definitionCHROMAT_FILE: MSMg01no303_h10.b1 PHD_FILE: MSMg01no303_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:23 2005CHROMAT_FILE: MSMg01no303_h10.g1 PHD_FILE: MSMg01no303_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,681,023 - 46,681,687)(46,523,848 - 46,524,492)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACCCTACTGACGCAATTTAATACTCACTTGGGAAAGATCT
CATGGCTCGTTATCCCTGGTATAGCACAGCTTTTGGAACCCAAAAAGACT
ATAAAACTTCTACAGTGAGAGGTAGGAACAGAAAAATGCTGTTTCTAAAA
ATAATAAAATAACTTTTGTTGCTCGAGATACCAGTATCAAAAGCTTAACC
CAGTTAGCTTTATGTGATTTTTAGTAACCTTCAAGTACAGAAACCATGCA
AACCTTCACAAACCCGTGCTTAAAGGTCTGAGGTCTGATAATAGGAACTA
GAAGGCACACAGACAAGAGACTCTACTACTTCAAGGGTAGAGAACATAGC
ACTGCAATTGATGGGGCTTCTTTAACAGTCTTGCCCCTACCCCATGCCAA
CAGTATGTACTTATATGTGTATATGAGTGTTCGTGTGCACGGGCCTAGAA
CCTGGTCGACTCTCTTGCCTTTGCATCAGCAAGAAAGGAGTGCAAAACAT
CCTTGTCTCCCTCTAACTCTGTTAGACGAAGGCAGTGGCATCCACCAAGC
TCCTAAAGGTTTCCAGTTGGGTTGCAGAGATCTGTAGCGTGCTCTCTGCA
CTAGGTCTCATCTTGCAGCCCTGCTACCAGATGANAGCAAAAGCAAAAAA
GCAGTAGCAAAGCCCAGGCTC

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTTGTAGCAAAATTTGGACTGTT
ATAAAGCAGAGTCAGTAAGTAAATTTAGAAAGAATGATTTATTCTTTACT
ATCCTAGACTCTTCCCTAGGAATTAGACCCTTTCTTTTTAAAACAGTGAT
ATCTCCACCACGACTTCATGGGAAAATAAAATCTTGCATCCTTGTGTGCC
CTTAGCTAATAACACATCACTGACAGGGTTGTCTTCTCTAATGCTCAAGC
TTTTTCAGAAGTGTTTCAAACAGTTATTTGATCCTCACAGTTGCTTTGGA
AGTAAAGTGGACGGGACGTATTATTCATACTTCTGGAGGAGAAAGGCGGG
GCCTGGGAATTGGGATTTTTCTGGAATTGTGTGAGTGGTGACTTAAGTTA
GAATCCAGGATCCCGACTCCTGTGTAGAATCACAACTTCCAAAAGTGGAT
ACACAGTACCCCGAGTGTTCCCTATCCCGTGTCACTGCTTGTTTTTAAGA
CAAGACCCCAAAGAACTTCCGCAGACCTCAGAAGAGTTTGAGGCTACTGG
GACATGTTTAAGCTTTGGAACAAATCTGGACAGCCACAGTGATTTCATTA
TCACAGCCCTTCTGTTGAGACTCTGCTCCCTGTGTGCTGGGTGTCTGTCT
GGCATGGCTGTGACACTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_h10.b1 MSMg01no303_h10.b1 CHROMAT_FILE:
MSMg01no303_h10.b1 PHD_FILE: MSMg01no303_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:23 2005
         (669 letters)



>mm_chr14_46680819_46681887
          Length = 1069

 Score = 1265 bits (654), Expect = 0.0
 Identities = 662/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccctactgacgcaatttaatactcacttgggaaagatctcatggctcgttatc 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaattcaccctacagaggcaatttaatactcacttgggaaagatctcatggctcgttatc 810

                                                                       
Query: 65  cctggtatagcacagcttttggaacccaaaaagactataaaacttctacagtgagaggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 cctggtatagcacagcttttggaacccaaaaagactataaaacttctacagtgagaggta 750

                                                                       
Query: 125 ggaacagaaaaatgctgtttctaaaaataataaaataacttttgttgctcgagataccag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ggaacagaaaaatgctgtttctaaaaataataaaataacttttgttgctcgagataccag 690

                                                                       
Query: 185 tatcaaaagcttaacccagttagctttatgtgatttttagtaaccttcaagtacagaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tatcaaaagcttaacccagttagctttatgtgatttttagtaaccttcaagtacagaaac 630

                                                                       
Query: 245 catgcaaaccttcacaaacccgtgcttaaaggtctgaggtctgataataggaactagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 catgcaaaccttcacaaacccgtgcttaaaggtctgaggtctgataataggaactagaag 570

                                                                       
Query: 305 gcacacagacaagagactctactacttcaagggtagagaacatagcactgcaattgatgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gcacacagacaagagactctactacttcaagggtagagaacatagcactgcaattgatgg 510

                                                                       
Query: 365 ggcttctttaacagtcttgcccctaccccatgccaacagtatgtacttatatgtgtatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggcttctttaacagtcttgcccctaccccatgccaacagtatgtacttatatgtgtatat 450

                                                                       
Query: 425 gagtgttcgtgtgcacgggcctagaacctggtcgactctcttgcctttgcatcagcaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gagtgttcgtgtgcacgggcctagaacctggtcgactctcttgcctttgcatcagcaaga 390

                                                                       
Query: 485 aaggagtgcaaaacatccttgtctccctctaactctgttagacgaaggcagtggcatcca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaggagtgcaaaacatccttgtctccctctaactctgttagacgaaggcagtggcatcca 330

                                                                       
Query: 545 ccaagctcctaaaggtttccagttgggttgcagagatctgtagcgtgctctctgcactag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccaagctcctaaaggtttccagttgggttgcagagatctgtagcgtgctctctgcactag 270

                                                                       
Query: 605 gtctcatcttgcagccctgctaccagatganagcaaaagcaaaaaagcagtagcaaagcc 664
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 269 gtctcatcttgcagccctgctaccagatgaaagcaaaagcaaaaaagcagtagcaaagcc 210

                
Query: 665 caggc 669
           |||||
Sbjct: 209 caggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_h10.g1 MSMg01no303_h10.g1 CHROMAT_FILE:
MSMg01no303_h10.g1 PHD_FILE: MSMg01no303_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:23 2005
         (645 letters)



>mm_chr14_46523648_46524692
          Length = 1045

 Score = 1247 bits (645), Expect = 0.0
 Identities = 645/645 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttgtagcaaaatttggactgttataaagcagagtcagtaagtaaatttagaaagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttgtagcaaaatttggactgttataaagcagagtcagtaagtaaatttagaaagaat 260

                                                                       
Query: 61  gatttattctttactatcctagactcttccctaggaattagaccctttctttttaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttattctttactatcctagactcttccctaggaattagaccctttctttttaaaaca 320

                                                                       
Query: 121 gtgatatctccaccacgacttcatgggaaaataaaatcttgcatccttgtgtgcccttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgatatctccaccacgacttcatgggaaaataaaatcttgcatccttgtgtgcccttag 380

                                                                       
Query: 181 ctaataacacatcactgacagggttgtcttctctaatgctcaagctttttcagaagtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaataacacatcactgacagggttgtcttctctaatgctcaagctttttcagaagtgtt 440

                                                                       
Query: 241 tcaaacagttatttgatcctcacagttgctttggaagtaaagtggacgggacgtattatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaacagttatttgatcctcacagttgctttggaagtaaagtggacgggacgtattatt 500

                                                                       
Query: 301 catacttctggaggagaaaggcggggcctgggaattgggatttttctggaattgtgtgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catacttctggaggagaaaggcggggcctgggaattgggatttttctggaattgtgtgag 560

                                                                       
Query: 361 tggtgacttaagttagaatccaggatcccgactcctgtgtagaatcacaacttccaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtgacttaagttagaatccaggatcccgactcctgtgtagaatcacaacttccaaaag 620

                                                                       
Query: 421 tggatacacagtaccccgagtgttccctatcccgtgtcactgcttgtttttaagacaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggatacacagtaccccgagtgttccctatcccgtgtcactgcttgtttttaagacaaga 680

                                                                       
Query: 481 ccccaaagaacttccgcagacctcagaagagtttgaggctactgggacatgtttaagctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccaaagaacttccgcagacctcagaagagtttgaggctactgggacatgtttaagctt 740

                                                                       
Query: 541 tggaacaaatctggacagccacagtgatttcattatcacagcccttctgttgagactctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggaacaaatctggacagccacagtgatttcattatcacagcccttctgttgagactctg 800

                                                        
Query: 601 ctccctgtgtgctgggtgtctgtctggcatggctgtgacacttgt 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctccctgtgtgctgggtgtctgtctggcatggctgtgacacttgt 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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