BAC Information

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BAC

Clone NameMSMg01-303O24
Chromosome14 (Build37)
Map Location 83,653,487 - 83,654,145
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303O24.T7 (MSMg01no303_o24.b1)MSMg01-303O24.TJ (MSMg01no303_o24.g1)
ACCAG429379AG429380
length719743
length of high quality
(start - end)
61 (245 - 305)674 (68 - 741)
definitionCHROMAT_FILE: MSMg01no303_o24.b1 PHD_FILE: MSMg01no303_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:58 2005CHROMAT_FILE: MSMg01no303_o24.g1 PHD_FILE: MSMg01no303_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCGGCGCTAAACGACTCACATAGTTTCCGACCCGCNGAANCCCAGAC
TATTTCCNGAGGCGAGGGNGAAAANNAGAAAGGAGCCCAGNAAACAGGGG
NTTTTTCCCCCACGAAACGGAGAANACNAGGGANNAAGNNNNCNNNACAA
AGGGACNNCAAGAGCNNCNAGGGGAANACCNNCCNNCGGAGGNACCCCAA
AANACCACCCAAAGGGCAGGAGGGCGCGCCNANACGCCCTTTTTTATATC
AGGCGAATGCATTGCCATGACCAGGAGCTTTTAAGATACCTCCAAAACAG
GGGTTATTTTTTTTTTACCGGAACGGGCGCACAANAAACAGAGGACATGT
TTTCCGCCCCACCCGTCGGAGCTCTTAAAGTTAGAGCCACTTTTAGCTCC
CCCCCCCACTCCTTTTTTTGTTTATTTTGAAACCGAACCAACCTTTCTGT
GTCAGTCACGCTATCCATGAATGTTCCATCCTCCAAAGACAGGTGTTCTC
TATTTCCATCGCCGTTCTACTATTGCCATGAACCACTCAGCGGCGGGATC
AAAGTTTTAGCCATTGCCTTATCAATCATATACGAGCCACTTTCAGTGAT
GCATCTAACTCTTGCTATCACCTGTCCGCACCACCACTACCATTTTTTTT
TTTTTTACGCACACCGGATTTCGGTTGGTCTTTGAAAACCTGACTACCTG
ACCTCATGGCGTCCGTCCC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAGAAAGGAAAAGTATAATGATTACAAGAATAT
TTAAGCTACATTTATGATAACTCTTCTGACTGAATTTGCTTCAGAATATT
GAAAATGTTTAAGCAATTTGCAAGAGACAGGAGAGCTATGTGGGAGGGTA
TAGACAGAGGCAAAGGAATGAGAGAGATGTAATTGTATATCTGAAATTAT
ATATTAAATTACAGAAAAGAGCTTCTGTTACCTGAGAAATGACCACTAGA
ACCAAGATTTGGAAACTTTTGGAAGTTGCCATTGCTTTAAGTATTGTTCA
ACAATGAAAAATTATTGTTACTGCCACAATATGAGAATCACAGGGCATGT
AAATACAATAAAATGACAGCATCATAAACAGTGATAAAATCTTTGAAAAC
ATGAGTATAACTAATCCTAATAAAATTTGTCAGATAAAATATACATAAAC
ATTACCATACATTAAGTGTATCAAGTAGGACAATATCAATTGATATTGCT
AGATATAATTACCTCATGTTTTACTACAGCCATACCAAAAAAGAACTCTA
AATATTTTAATTGTAATTAATTCACATAATATTTTAATTTTATTTGGTAC
TAAAAGGACAATATTGCCAATGGCTATTTAAAAGCTATTGTGAAAACATG
CTAGGAGGATATTTGAATATTTTTTCATTCAATTATTCATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_o24.g1 MSMg01no303_o24.g1 CHROMAT_FILE:
MSMg01no303_o24.g1 PHD_FILE: MSMg01no303_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:58 2005
         (674 letters)



>mm_chr14_83653414_83654488
          Length = 1075

 Score = 1181 bits (611), Expect = 0.0
 Identities = 647/659 (98%), Gaps = 1/659 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaaaggaaaagtataatgattacaagaatatttaagctacatttatgataactcttct 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tagaaagtaaaagtataatgattacaagaatatttaagctacatttatgataactcttct 673

                                                                       
Query: 61  gactgaatttgcttcagaatattgaaaatgtttaagcaatttgcaagagacaggagagct 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gactaaatttgcttcagaatattgaaaatgtttaagcaatttgcaagagacaggagagct 613

                                                                       
Query: 121 atgtgggagggtatagacagaggcaaaggaatgagagagatgtaattgtatatctgaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atgtgggagggtatagacagaggcaaaggaatgagagagatgtaattgtatatctgaaat 553

                                                                       
Query: 181 tatatattaaattacagaaaagagcttctgttacctgagaaatgaccactagaaccaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tatatattaaattacagaaaagagcttctgttacctgagaaatgaccactagaaccaaga 493

                                                                       
Query: 241 tttggaaacttttggaagttgccattgctttaagtattgttcaacaatgaaaaattattg 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | 
Sbjct: 492 tttggaaacttttggaagttgccattgctttaagaattgttcaacaatgaaaaattagta 433

                                                                       
Query: 301 ttactgccacaatatgagaatcacagggcatgtaaatacaataaaatgacagcatcataa 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 432 ttactgccacaatatgagaatcacaggacatgtaaatacaataaaatgatagcatcataa 373

                                                                       
Query: 361 acagtga-taaaatctttgaaaacatgagtataactaatcctaataaaatttgtcagata 419
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acagtgaataaaatctttgaaaacatgagtataactaatcctaataaaatttgtcagata 313

                                                                       
Query: 420 aaatatacataaacattaccatacattaagtgtatcaagtaggacaatatcaattgatat 479
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 312 aaatatacataaacattaccatacattaagtgtgtcaagtaggacaatatcaattgatat 253

                                                                       
Query: 480 tgctagatataattacctcatgttttactacagccataccaaaaaagaactctaaatatt 539
           ||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 252 tgctagatataattatctcatgttttactatagccataccaaaaaaaaactctaaatatt 193

                                                                       
Query: 540 ttaattgtaattaattcacataatattttaattttatttggtactaaaaggacaatattg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttaattgtaattaattcacataatattttaattttatttggtactaaaaggacaatattg 133

                                                                      
Query: 600 ccaatggctatttaaaagctattgtgaaaacatgctaggaggatatttgaatatttttt 658
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ccaatggctatttaaaagctattgtgaaaacatgctaggaggatatttgaatatttttt 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space:   707160
Effective search space used:   707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)