BAC Information

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BAC

Clone NameMSMg01-305O08
Chromosome14 (Build37)
Map Location 68,086,984 - 68,087,282
singlet/doubletsinglet
Overlap geneLOC100043046
Upstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416
Downstream geneLOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305O08.T7 (MSMg01no305_o08.b1)MSMg01-305O08.TJ (MSMg01no305_o08.g1)
ACCAG430716AG430717
length1,2931,332
length of high quality
(start - end)
409 (43 - 451)299 (101 - 399)
definitionCHROMAT_FILE: MSMg01no305_o08.b1 PHD_FILE: MSMg01no305_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:24 2005CHROMAT_FILE: MSMg01no305_o08.g1 PHD_FILE: MSMg01no305_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCAACACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTTGTAGACCAGGCTGGCCTGGAACTCAGAAATCTGCCTGTCTCTG
CTGCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCACCACGCCCAGCGAC
AGGTAGCTTTCTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGT
AAGTACGCTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTT
GTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGG
ACCTTCGGAAGAGCAGTCAGGTGCTCTTACCCACTGAGCCATCTCACCAG
CCCTTGCTTGGTATTTTTTTCCTTTTTTTTTAATTAATTAGGTATTTTTT
TTTTTTACATTTCCAATGCTACCCCATAAGTCCCCCAAACCCTCCCCCGT
TTTTTTTTTCCCCCCCCCCNGGGNNNTGGTGTTCCCCTCAAAAGAGGGGG
GGGGNGNTNGCNNGANCNNTGGGCCTCTCTTTCCACTGATGGCNCCCTAG
GTCATCTTCTGATACATATGCAGCTAGAGACACGAGCTCCGGGGGTACTG
GTTAGTTCATATTGTTGTTCCATCTATAGGGCTGCAGACCCCTTTAGCTC
CTTGGGTACTTTCTCCAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAA
TAGCTGACTGTGAGACTCCACTCATGTGTTTGCCAGGCCCCTGCATAGCC
TCTCAAGAGACAACTAAATCCTTTTCCTTTCAGCAACATCTTGCTAGTGT
GTGCAATGTTGCCCATTTTTTGGGGGCCAGATTATGGCAAGGAATCCCCG
GGTATGTTCCTTCTCTATATGGATCACCCTTTTCTCTAATTTTCCAACTT
TGTTCTTGTATTCCCTTCATGGGTGTATTTTTTCCAATTCTAAGAAGGCA
CAAGTGCTCCCTCGTTCGATCTTTGTACTTCTTGAGTATTAGCAGTTTGT
CAAATGAATTTGGGATCTTGGGAATTTCTAACCTTTTGCCAAATTAACCT
TATCTAGGATATATTTCTGTGGATTTCTTTTTGAATTGTGTATGTTCCCC
CTTAAAGTGATCTACTACTTCTCCCCTTGCCTTCAATTTCATACATCTCT
TTCCTTCTAACTCTAAATAAATCCCTGTTATCTCTCAATTTTATATTTCT
CTCTATTTCTTGCACCTCGATCCCCCCTCCATCCTCTTATTACATAACAC
GATAATCTACCTGATCTAATGTATCTCTTGCTTATCTCCTATG
NNNCCCGAGAGTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCATCTGTTGCTAGGGTCGCCTTCTGGC
AGTACATCTTCAGAGGTGTGCTGGAGGAGGAGCTCGCAGTGCTGATAAAT
GAATCAGAGAGACAGGAGGGAAGCTGGCAGGGTCCCTGCAGGCAATGATG
GGGGCCCGGATCACATGCTCGAGCCAGCCTCCTGCCTCTTACCTGTGGGG
GACTGAGCCTGGTCTCTGGGCCTTAATGCTCAGGGGTAAATCTCCATTTG
CAAGCTGTGCAATGGGGGTGGGCAATGTGAGGGAGAAGAGAGAAGGACCA
GGAAGAACATGGGAGGAGGGAGAAAAAGAGACAAAGATATCTGTCTGGTT
TTTGTTGAAGGGCCAGCAAAACCTCTTTAACTCGGGCTCCGTAAGNCGAG
ATTTTTTTTTTCCCCCTCCCCAAGAGAAANCTGACCCTCAAAAAAAAGAG
GGGAGTGGCCTATATTGATCTGAGAGCCCTAGATGTATTGAAATATTCAT
GGCTGGATGTATGTGTTCAGAGGAGACGCTGGGGGTGGGGCCTGGCTCTG
AGAGCGGGAGGTGGGTAGGTAGATTTCTAAGTAAAAGCTGTTCGCATTTT
CATTAAAAATACATTAATTCTATTAGTTGGACTAAAACCTCACACTTAAA
AGGAAATGAGCTTGTTTGTCAGGAAAACAAGCCACTGGCAAATTTAGAAG
AAGAAAGAAAGAAAAAAACCCCTACTTTTATTTATTGCTATTTAATAGCA
GAAGAGCCAGGGGGAGTTGATAAAATTAGCACTGTGTCCCCAGGGGGTGG
GCAGGGGGCCTGCTTTGTTTGCAAAGCCCAATTTGGTCACCACAGCTTTG
ATCTTCACTTTGAACCTTTGAACAGGGATGACTATTGCTCATTTCACAGG
AAAATTGGGATTCAAGTTTCCCCCACAATCTAAAAAGTGAATCATTAAAG
GGGGGTTGTCTGCCGGTAATCTCCAGATCGGAATACCCTGAAAACCAATT
TGAAATGATACTTTCCCCCCAAAGGGGGCCACCTGAAAAGAAACCCAGGG
CCCAGGAAACCCTGTCCCTGCTTGGAAAAATTTAACATTGGTATTTCCAC
CCCCCCTGGAGAAAGGGGTGGGAGAAAGGGTTCTATATTTAAACTCTCCG
ACAATAAATGCAAAATGGTCACACATTTTTTAATAATATCTGTCGGGGAT
GTTACACACCACCATATGGAGACTGTGTCCTAAATACGAGGCCAAAGATA
AATTAGTGTGTCGGGAGCCCCTTCTTACTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_o08.g1 MSMg01no305_o08.g1 CHROMAT_FILE:
MSMg01no305_o08.g1 PHD_FILE: MSMg01no305_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:24 2005
         (299 letters)



>mm_chr14_68086784_68087482
          Length = 699

 Score =  571 bits (295), Expect = e-167
 Identities = 298/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacatcttcagaggtgtgctggaggaggagctcgcagtgctgataaatgaatcagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtacatcttcagaggtgtgctggaggaggagctcgcagtgctgataaatgaatcagaga 260

                                                                       
Query: 61  gacaggagggaagctggcagggtccctgcaggcaatgatgggggcccggatcacatgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaggagggaagctggcagggtccctgcaggcaatgatgggggcccggatcacatgctc 320

                                                                       
Query: 121 gagccagcctcctgcctcttacctgtgggggactgagcctggtctctgggccttaatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagccagcctcctgcctcttacctgtgggggactgagcctggtctctgggccttaatgct 380

                                                                       
Query: 181 caggggtaaatctccatttgcaagctgtgcaatgggggtgggcaatgtgagggagaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggggtaaatctccatttgcaagctgtgcaatgggggtgggcaatgtgagggagaagag 440

                                                                      
Query: 241 agaaggaccaggaagaacatgggaggagggagaaaaagagacaaagatatctgtctggt 299
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaggaccaggaagaacatgggaggagggagaaaaagagacaaagatatctgtctggt 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)