Query= MSMg01no306_h18.b1 MSMg01no306_h18.b1 CHROMAT_FILE:
MSMg01no306_h18.b1 PHD_FILE: MSMg01no306_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:17 2005
(679 letters)
>mm_chr14_123007185_123008263
Length = 1079
Score = 1243 bits (643), Expect = 0.0
Identities = 668/677 (98%), Gaps = 2/677 (0%)
Strand = Plus / Plus
Query: 5 gaattccagatatgaccatgcctacaattcctccctggtataaaactgaatagttcattt 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagataggaacatgcctacaattcctccctggtataaaactgaatagttcattt 264
Query: 65 gcttttcagttaaaacacaacaacaacatcaacaacaaaatagaaacaaataccatctta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcttttcagttaaaacacaacaacaacatcaacaacaaaatagaaacaaataccatctta 324
Query: 125 cagtgtggtggtttaggaagcagaggctggaaggttgtacacaggtctttgaggggtagc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 cagtgtggtggtttaggaagcagaggctggaaggttgtacacaggtctttgaagggtagc 384
Query: 185 ctggtctatattgctctagatgatccagggatacaaaaacagaaacaaaaacaagctcaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggtctatattgctctagatgatccagggatacaaaaacagaaacaaaaacaagctcaa 444
Query: 245 aacccaaaaccaaaccagaccatctccctaaagactgagtaatgctgcagagaagacgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacccaaaaccaaaccagaccatctccctaaagactgagtaatgctgcagagaagacgag 504
Query: 305 aagtgaccttgctggaaacaggaactgttttcacgtgccttctctaatctctttgcaggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagtgaccttgctggaaacaggaactgttttcacgtgccttctctaatctctttgcaggt 564
Query: 365 tgcatttaccacactcaagcacaagctcaaatcaagtgctgtgactggagcttgatggca 424
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 tgcatttaccacactcaagcacaagctcaaatcaagtgctgtgactggaacttgatggca 624
Query: 425 tacagctcttacatcagtatacagcatgatagagcttgctgcctgataataaagtggaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacagctcttacatcagtatacagcatgatagagcttgctgcctgataataaagtggaga 684
Query: 485 tggtaaaagggagaggaggacaggttctccactgttcattgttcttacatggtggacacc 544
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 685 tggtaaaagggagaggaggacaggttctccactgttcattgttcttacatagtggacacc 744
Query: 545 atgtagcttcttgaagcctgttccctgcttgcagcaaaggtgactagtgtacaacggctc 604
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745 atgtagcttcttgaagcctgttccctgtttgcagcaaaggtgactagtgtacaacggctc 804
Query: 605 attttagagcttagcactcatacaatgagtggatgctttgactaaaagctctgtgtgtgt 664
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 attttagagctcagcactcatacaatgagtggatgctttgactaaaagctctgtgtgtgt 864
Query: 665 gtg--ggggcagcagaa 679
||| ||||||||||||
Sbjct: 865 gtgtgggggcagcagaa 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_h18.g1 MSMg01no306_h18.g1 CHROMAT_FILE:
MSMg01no306_h18.g1 PHD_FILE: MSMg01no306_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:17 2005
(680 letters)
>mm_chr14_123185504_123186583
Length = 1080
Score = 926 bits (479), Expect = 0.0
Identities = 515/539 (95%), Gaps = 19/539 (3%)
Strand = Plus / Minus
Query: 142 aaggaagcaaggtaactaattttatacccagccaaggttccttaaggtataacgcaaaaa 201
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 1080 aaggaagcaaggtaactaattttatatccagccaaggttccttaaggtatagcgcaaaaa 1021
Query: 202 tatattctctgcatgaagggactgaggtgggaggaagtttctaaaaataagacatctttg 261
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1020 tatattctctgcatgaagggactgaggtgggaggaagtttctaaaaataagacaactttg 961
Query: 262 taggaactaaagtaaaaactactgtcaaagaaattcagaacaatatatacagtgagctat 321
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 taggtactaaagtaaaaactactgtcaaagaaattcagaacaatatatacagtgagctat 901
Query: 322 cctttcttttaaaaatatatgtattaaaaaaaaatatatgtatttctttattgatgctgt 381
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 900 cctttctttt-------------------aaaaatatatgtatttctttattgatgctgt 860
Query: 382 tttgtatgtttttaagatgaggtcttgaatgctgcccaagcttgacataaacaacaaatt 441
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 859 tttgtatgtttttaagatgaggtcttgaatgctgcccaagcatgacataaacaacaaatt 800
Query: 442 ctcctgtctcaggtactaggaagacagtcatggaccacacaaatagttttaaaattaaat 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctcctgtctcaggtactaggaagacagtcatggaccacacaaatagttttaaaattaaat 740
Query: 502 aatttgttgtttactcatttgattaccatgttgctaggcaagcgaattactatgaaatat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aatttgttgtttactcatttgattaccatgttgctaggcaagcgaattactatgaaatat 680
Query: 562 agccccagtccccaaagatatgcagtgatttaaaacttctcaatattctttgcttctcag 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agccccagtccccaaagatatgcagtgatttaaaacttctcaatattctttgcttctcag 620
Query: 622 caggaaggtacatctctctaagaaagtggcctttaagctaagatcagaaagatgagcat 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caggaaggtacatctctctaagaaagtggcctttaagctaagatcagaaagatgagcat 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
