Query= MSMg01no307_k21.b1 MSMg01no307_k21.b1 CHROMAT_FILE:
MSMg01no307_k21.b1 PHD_FILE: MSMg01no307_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:48 2005
(700 letters)
>mm_chr14_79755150_79756251
Length = 1102
Score = 1172 bits (606), Expect = 0.0
Identities = 674/706 (95%), Gaps = 20/706 (2%)
Strand = Plus / Minus
Query: 2 gaattctttattg-gtaatccgtgttagccatttggttcagttcttagtaaaatcataat 60
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gaattctttattgtgtaatcagtgttagccatttggttcagttcttagtaaaatcataat 653
Query: 61 taactagtttttaggtaaactgatacaatcatgtcaaactggaacccatttttatacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 taactagtttttaggtaaactgatacaatcatgtcaaactggaacccatttttatacatt 593
Query: 121 gttttccatttctgtgacactcctttttacttgctcataagtggttttcctcctcctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gttttccatttctgtgacactcctttttacttgctcataagtggttttcctcctcctgca 533
Query: 181 gcatatgggtaatctcaaagaagccgcacagtggatggatgaggcacagtctttggacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gcatatgggtaatctcaaagaagccgcacagtggatggatgaggcacagtctttggacac 473
Query: 241 ggctgacaggttcatcaattccaaatgtgccaaatacatgcttcgagcaaatatgataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggctgacaggttcatcaattccaaatgtgccaaatacatgcttcgagcaaatatgataaa 413
Query: 301 agaagcagaggaaatgtgttccaggttcacaagggtaggaaataacttataagtatgtga 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agaagcagaggaaatgtgctccaggttcacaagggtaggaaataacttataagtatgtga 353
Query: 361 ttgcctgagtt-----acccccaccgaagttctctgatacaagtttgtcgttaaattcat 415
||||||||||| | | ||||||||||||||| ||||||||||||||||||||
Sbjct: 352 ttgcctgagttaggaaa-----atcgaagttctctgatataagtttgtcgttaaattcat 298
Query: 416 aagaataa-ctatttttaaaattccattaatctgtgttctaactatggcttcttgccatg 474
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 297 aagaataacctatttttaaaatcccattaatctgtgttctaactatggcttcttgccatg 238
Query: 475 atgtgtttgtgctcctggctgcaaaattcagtttgtgctgggtatggtagtgcatacctt 534
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 237 atgtttttgtgctcctggctgcaaaattcagtttgtgttgggtatggtagtgcatacctt 178
Query: 535 taatcccagcacgcaggaggcagaagcaggctgatctttgtgaattcaaggccaggctgg 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 177 taatcccagcacgcaggaggcagaagcaggctgatctttgtgaattcaaggccacgctgg 118
Query: 595 ttttcatagtgagatccagggttggataatgacatcatgccttacaataaataaacttta 654
|||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 117 ttttcatagtgagatctagggttggataatgacaccatgcctta----aaataaacttta 62
Query: 655 aaaatttagttcataaaccaggcagtggtagcacacccctttaatc 700
|||||||||||||||| ||||| |||||||||| |||||||||
Sbjct: 61 aaaatttagttcataagccagg----ggtagcacacgcctttaatc 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1102
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1092
Effective search space: 753480
Effective search space used: 753480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_k21.g1 MSMg01no307_k21.g1 CHROMAT_FILE:
MSMg01no307_k21.g1 PHD_FILE: MSMg01no307_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:48 2005
(244 letters)
>mm_chr14_79552275_79552918
Length = 644
Score = 420 bits (217), Expect = e-122
Identities = 238/247 (96%), Gaps = 4/247 (1%)
Strand = Plus / Plus
Query: 1 accagaatatagggttctgcaggacagaagagggtccagtttctgccgctcagccaagat 60
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 197 accagaatatagggttctgcaggacagaagagggtccagtcactgctgctcagccaagac 256
Query: 61 gtcacaggcaagcacatgtgcacacacacacacacacacac----tcatgcacgtatgca 116
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 257 gtcacaggcaagcacatgtgcacacacacacacacacacacacactcatgcacgtatgca 316
Query: 117 tgcacatatacacccaccattcccctcctgtatctctccttgctttttgattccaggacc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgcacatatacacccaccattcccctcctgtatctctccttgctttttgattccaggacc 376
Query: 177 ttttctatgaaaggaagaagaaaagaagacccgaattatcaattagtaataacagtactt 236
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttctctatgaaaggaagaagaaaagaagacccgaattatcaattagtaataacagtactt 436
Query: 237 gaagtac 243
|||||||
Sbjct: 437 gaagtac 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
