BAC Information

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BAC

Clone NameMSMg01-307O10
Chromosome14 (Build37)
Map Location 124,198,224 - 124,198,865
singlet/doubletsinglet
Overlap geneItgbl1
Upstream genePcca, BC006662, 4930594M22Rik, Tmtc4, Vgcnl1, LOC668700
Downstream geneFgf14, GA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307O10.T7 (MSMg01no307_o10.b1)MSMg01-307O10.TJ (MSMg01no307_o10.g1)
ACCAG432125AG432126
length720719
length of high quality
(start - end)
673 (48 - 720)643 (77 - 719)
definitionCHROMAT_FILE: MSMg01no307_o10.b1 PHD_FILE: MSMg01no307_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:04 2005CHROMAT_FILE: MSMg01no307_o10.g1 PHD_FILE: MSMg01no307_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGGCTTTGCGTTGGCCCACTATCTGCACTATATATGAACTAC
CGGAGCACATGAAGGTGCCAGTCATTCAGAACCAAAGGTGTAAGATCTCT
AAGACACAGGGCAACAACAGTACATCTGAGAGGAGTCCCAGTGAGCATCC
AATATTGATGGTGTAGTGGAAGCTAGAGGCTCAAACAGACCAATAACTCA
CTGCAATGAACATTTGCAAGAAAAAGCTGTTTGGGCAAAAGAGTAGAGTG
TGTAACACACCATGCATGATACTTCCACAGTGAGATTTTCTTTTCTTGTT
TGTTTGTTTGCTTGATTGATTGATTTTGAGGGGTCAGAGATTGCAATGGT
GGAGACATTGCAGATGTTAACGCACAGAGAGATGAGTGGGTTCGGGGGCC
ATGATGTAAAATTTACAAAGAATCAATAAGAGTTTTTAAAAATTTCTAGA
CTAGCAAATTGAAAGAGATGAAACACACACATACACACACATACACACGT
GCGCACGCACACGCACATGCACACGCACATGCACACATGCAAAAATACAT
GACCATCACCACCACCACTATCACCATCACCACAAATAACAACATCAAAT
TAACAAGAATCAACAAATGTCACTTATTGTATCTCTCAACATCAATGGTC
TCATTCCTCAATAAGACACA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATTCAGACTCAGGATGGACAGG
AAGTATGAAAAATACCCAAAATACCCATAATGTCTCTCTTTCATCTAGCT
TAGAATAATTCTTATGAACTTTGCAAATCTATTCTTAATTCAGTTATATT
AAAACTGAATTGCACATAAAAGTGGAATATACCTGTATAAATTTTATTAA
TTTGTAATTTTATGTCTTTTTATAGTAATAGTATATATAAACAAAATAAA
TGTTTCTAAAGATAAAAATATAAATATTATTTTTATTGTTTCTTTCTTGA
CATATTCCATGAATGAATGATGTTAATACACTCTAGACTATTTGTATTAG
ATCTTGGCCTACCATTAATAATCAGAGAGAACAATATGAATTCTGACATT
TATTTATTTATTCATGTTTTGAGATTTTTAAGAGGCAGTTGATAATAAGG
CCTATTATTAATGTAGAGAAACTTTAAGGAACTTTAGAAAAAAATCTCAA
GCAACATGCAGAAACAAACATACATGCATGATTTGACCTGGTTATAATTT
TGTTAGCATACTGACTAACAATGAAAGTAAAATGTGTAAAAAATACATAT
TTAAGTGAATACCCACTTCAAATTGAATAATAGCTTAATTTTTAAGGACT
TTCCCACTAGTTTTGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_o10.g1 MSMg01no307_o10.g1 CHROMAT_FILE:
MSMg01no307_o10.g1 PHD_FILE: MSMg01no307_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:04 2005
         (643 letters)



>mm_chr14_124198024_124199066
          Length = 1043

 Score = 1210 bits (626), Expect = 0.0
 Identities = 638/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattcagactcaggatggacaggaagtatgaaaaatacccaaaatacccataatgtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 atattcagactcaggatggacaggaagtatgaaaaatacccaaaataccaataatgtctc 260

                                                                       
Query: 61  tctttcatctagcttagaataattcttatgaactttgcaaatctattcttaattcagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttcatctagcttagaataattcttatgaactttgcaaatctattcttaattcagtta 320

                                                                       
Query: 121 tattaaaactgaattgcacataaaagtggaatatacctgtataaattttattaatttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattaaaactgaattgcacataaaagtggaatatacctgtataaattttattaatttgta 380

                                                                       
Query: 181 attttatgtctttttatagtaatagtatatataaacaaaataaatgtttctaaagataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttatgtctttttatagtaatagtatatataaacaaaataaatgtttctaaagataaa 440

                                                                       
Query: 241 aatataaatattatttttattgtttctttcttgacatattccatgaatgaatgatgttaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 aatataaatattatttttattgtttcttccttgacatattccatgaatgaatgatgttaa 500

                                                                       
Query: 301 tacactctagactatttgtattagatcttggcctaccattaataatcagagagaacaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacactctagactatttgtattagatcttggcctaccattaataatcagagagaacaata 560

                                                                       
Query: 361 tgaattctgacatttatttatttattcatgttttgagatttttaagaggcagttgataat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaattctgacatttatttatttattcatgttttgagatttttaagaggcagttgataat 620

                                                                       
Query: 421 aaggcctattattaatgtagagaaactttaaggaactttagaaaaaaatctcaagcaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggcctattattaatgtagagaaactttaaggaactttagaaaaaaatctcaagcaaca 680

                                                                       
Query: 481 tgcagaaacaaacatacatgcatgatttgacctggttataattttgttagcatactgact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcagaaacaaacatacatgcatgatttgacctggttataattttgttagcatactgact 740

                                                                       
Query: 541 aacaatgaaagtaaaatgtgtaaaaaatacatatttaagtgaatacccacttcaaattga 600
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 741 aacaatgaaagtaaaatgtgtaaaaaatacatatttaagtgagtacccagttcaaattga 800

                                                     
Query: 601 ataatagcttaatttttaaggactttcccactagttttgtga 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataatagcttaatttttaaggactttcccactagttttgtga 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)