BAC Information

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BAC

Clone NameMSMg01-308B22
Chromosome14 (Build37)
Map Location 14,722,808 - 14,723,120
singlet/doubletsinglet
Overlap geneGm281
Upstream geneLOC100042022, LOC100042026, EG328354, Synpr, A430083B19Rik, EG382844, LOC100042045
Downstream geneThoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308B22.T7 (MSMg01no308_b22.b1)MSMg01-308B22.TJ (MSMg01no308_b22.g1)
ACCAG432286AG432287
length707716
length of high quality
(start - end)
294 (68 - 361)459 (78 - 536)
definitionCHROMAT_FILE: MSMg01no308_b22.b1 PHD_FILE: MSMg01no308_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:21 2005CHROMAT_FILE: MSMg01no308_b22.g1 PHD_FILE: MSMg01no308_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTATTCACGATGAGGTGGGATTTTTCCAGTGATGCCACTTTTCTT
GAGCCCCCATCCAAAAACACAACAAAACAAAACAACTCCTGGAAATATCA
ATTCATATACATGCTCCTGTGTGAAAACCAAATAAAATAAACTCATTGGT
TTGCCAAGTTGATCTTAGAAGGAATCCTTTCTTAGGTGTCTCATTAGGAT
TTTGTCTGGAATGAGTAAATATTAACAAATCACATTTCCAACTCTGAGTT
TGAACCCTATTCTAGCTATTTAGAACTCTGTCACCTGAGGCAATTATTTA
ACCTCTTGTATACTATAAAACACACATCCTGTTGGTGTTCTGACCCAGGA
TTTCCACTTGCTCCCCAAGTCTCGTTCCCCCCCCCCCATTGCCTTGCATC
ACTGAGCTGCATTTCCACTCACAGAGATCTGTTTTAAGTTGAGGATTGTT
AAAAGATTAAATGGTAGGATTGTCATAAGCATGTATAGTAAATGCCAAGA
AAATGTAAGCTATTGTTAGAGAAAAAGGAATAGAAAAATAATTTTAATAC
ATGCAACACCAAACTCTGACTATAAGCAATCCATGTATTTGCACATTCGA
ACCTCCACCCTCAGCCTTGTCTTTCTCAGAAAAAGTTATTCTAACTGGCA
TCTAATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATGAGTATGGGCTACATTAA
CAAGATTGTGCCTCAAAAGAGAAAAAGAATGAGGCACAGGAAATCCCCAA
TGAAAACAACTCCAAACAGTCATTTGCTCTTTAGGAATTATTATATGAAG
TAGAAACGTAAGGGTTCTTTGGAAAGTCAGTTGGATGGTGTTTTGCTCGG
GCAAACTTGTGAAGAATGTTTAGCTGAAGTGGACACAGGTGAAATACTAA
GGTAGTTTCATGAAGGAACGTTTCACTGAAGCAGACACAGGAGGAGATAG
GATGTTCTGCTAACGCAGGCATGTGGAAGGACACGTGATGAAGGAGTTTT
TGCTAACAACACATGTATTCCCCCACCTTACCTTGTGTAGCTGGTCTACA
TTTGTTGGAACCCCAAATGCTCAAAAAACACTTCTGGTGATGTGCTGAAG
TTTCTTGCTTCTATGAACTTGGGCTGACTGGCAGAGTGATGGCAGCTGAG
ACAGACTCACGAGTTGAGGCAAGACCTGTGGAGGCCATGTGATGCTTGGA
GGGCATATACAAAGGACTCAATGGACAGTAACAGTGCCTGAGCTTGGCTT
GCTTATAGAGCCAGCCGCGCAACACTCGTGGGTCTTGCATCTTTCCCGAT
CCTTGCTTCCCTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_b22.g1 MSMg01no308_b22.g1 CHROMAT_FILE:
MSMg01no308_b22.g1 PHD_FILE: MSMg01no308_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:22 2005
         (459 letters)



>mm_chr14_14722808_14723661
          Length = 854

 Score =  549 bits (284), Expect = e-160
 Identities = 308/318 (96%), Gaps = 5/318 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatgagtatgggctacattaacaagattgtgcctcaaaagagaaaaagaatgaggcac 60
           ||||||||||||||||  ||   |||| ||||||||||||||||||||||||||||||||
Sbjct: 313 aaaatgagtatgggct--at---caaggttgtgcctcaaaagagaaaaagaatgaggcac 259

                                                                       
Query: 61  aggaaatccccaatgaaaacaactccaaacagtcatttgctctttaggaattattatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aggaaatccccaatgaaaacaactccaaacagtcatttgctctttaggaattattatatg 199

                                                                       
Query: 121 aagtagaaacgtaagggttctttggaaagtcagttggatggtgttttgctcgggcaaact 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 198 aagtagaaacgtaagggttctttggaaagtcagttggatggtgttttgctggggcaaact 139

                                                                       
Query: 181 tgtgaagaatgtttagctgaagtggacacaggtgaaatactaaggtagtttcatgaagga 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 138 tgtgaagaatgtttagctgaagtggacacaggtgaaagactaaggtagtctcatgaagga 79

                                                                       
Query: 241 acgtttcactgaagcagacacaggaggagataggatgttctgctaacgcaggcatgtgga 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 78  acgtttcactgaagcagacacagaaggagataggatgttctgctaacgcaggcatgtgga 19

                             
Query: 301 aggacacgtgatgaagga 318
           ||||||||||||||||||
Sbjct: 18  aggacacgtgatgaagga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 854
Length adjustment: 10
Effective length of query: 449
Effective length of database: 844
Effective search space:   378956
Effective search space used:   378956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)