BAC Information

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BAC

Clone NameMSMg01-308E16
Chromosome14 (Build37)
Map Location 125,017,725 - 125,018,089
singlet/doubletsinglet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700, GA_x5J8B7W4W3R-189177-188236
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308E16.T7 (MSMg01no308_e16.b1)MSMg01-308E16.TJ (MSMg01no308_e16.g1)
ACCAG432414AG432415
length735770
length of high quality
(start - end)
368 (45 - 412)205 (74 - 278)
definitionCHROMAT_FILE: MSMg01no308_e16.b1 PHD_FILE: MSMg01no308_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:34 2005CHROMAT_FILE: MSMg01no308_e16.g1 PHD_FILE: MSMg01no308_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGATGTTCCTAGGCTTGCTGACCACTGAGCTTCTAGGATTCTCC
TATCTTTGCCTCTGAGGGCTGCAATTATAGATATGAAGCATCATGTCTGA
TAGGGATAGGAACTTAGGTCATCTTGTTTGCACAGTAATCGCTTTACCCA
GTAAATCATTTTCACGGCCTCCCAAAAATAATTTTCAAAATCTCTAAATA
ATACACTGCCATCTACAAACACCCAATATTAATTTATGTATGGAAAGACT
TTAACTAAGAGCCATGTATTCATATGTGTGCATGAAGAAGCATTTTTACA
TCCTGAGTTGATGATCTTTTTTTATTTGTGGCTCTGCACCCTGTCTTTTG
ATGTCACATTATGCCCCCAAATATAGCCTTAGTCTTCTTTGGGAAGTAAT
GAAACACTGATTAGAATTTTAGTGCTTGAGTTGAGATCAACCTTTCCTCC
ACACCCCAATGCTTAGTAGCTGTTTTGCCTGGGGATATATGGCTTATCAA
CTAAAACTATAATTATACAACTTATTTATAGTTAAATAATTACTTCATGC
ATAGTTATACAACATTTAAATAGCTGTATGACATTCCATTTCATGGGTAA
ATCTACTTATAAGAACTTTAAATTATTTCTTCCTTGCACTATAATTAAAC
TTTTGAGTTTGAACTTGATATTTTCCCAACTGTTA
CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATGTATGCCAGCTTTTGTTGTGCAA
ATCTTTCTCCTTAATTTAAAACTATTGGTTTAAGCTGGGCGTGGTGGCAC
ACACCTTTAATCCCAGCACTCAGAAGGCAGAGGCAGGCGGATTTCTGAGT
TCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGTGCTGCA
CAGAGAAACCCTGTCTCGAAAAACCAAAATGCCTAAACAAAATAAAAAAA
AAAAAAAAAAAAGCCCTATTGTTTGTTATAGATGCCTACAGCCTGTAGCT
GGGCAGAAGATAGGGTGGGTTCCCTTAGCAATACTCTGATTTGGAGTCTG
CTGCATAGACAAACAGCCCCCCCCAAAAAAAATAAAAAAAGTAGGGGGGG
GGGGGGCACTTCCCCACTATGGCCAGCCAGTTTGAGCATGACCAGCCCAT
ATTAACCGAGCCTAGCGATATCTCATAATTACGGCCCGCCCACTTTATAA
TACGACCTAAATGCCTTGCTTCTCTGCCCCCCTTTCTTTTGATCTTCGGT
TTTCCCATACACCCCTTAGGCCTTGCCCGCTCATTTTTTGCCCCAACTAT
TTTGAACCCAAAGGGGGCCCCTCCCCCCCCTTCATTTTTTATTTTATTCC
CTCACTTTGCCCACCACCCTTTCTTTCCACTCCCCCTATTCCCCTTTTTT
AGTTCCCCCCCCCCCACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_e16.b1 MSMg01no308_e16.b1 CHROMAT_FILE:
MSMg01no308_e16.b1 PHD_FILE: MSMg01no308_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:34 2005
         (368 letters)



>mm_chr14_125017522_125018289
          Length = 768

 Score =  671 bits (347), Expect = 0.0
 Identities = 361/367 (98%), Gaps = 4/367 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgatgttc--ctaggcttgctgaccactgagcttctaggattctcctatct 61
           ||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggaattcactgatg--cagctaggcttgctgaccactgagcttctaggattctcctatct 511

                                                                       
Query: 62  ttgcctctgagggctgcaattatagatatgaagcatcatgtctgatagggataggaactt 121
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttgcctctgagggctggaattatagatatgaagcatcatgtctgatagggataggaactt 451

                                                                       
Query: 122 aggtcatcttgtttgcacagtaatcgctttacccagtaaatcattttcacggcctcccaa 181
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 450 aggtcatcttgtttgcacagtaatcgctttacccagtaaataattttcacggcctcccaa 391

                                                                       
Query: 182 aaataattttcaaaatctctaaataatacactgccatctacaaacacccaatattaattt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaataattttcaaaatctctaaataatacactgccatctacaaacacccaatattaattt 331

                                                                       
Query: 242 atgtatggaaagactttaactaagagccatgtattcatatgtgtgcatgaagaagcattt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atgtatggaaagactttaactaagagccatgtattcatatgtgtgcatgaagaagcattt 271

                                                                       
Query: 302 ttacatcctgagttgatgatctttttttatttgtggctctgcaccctgtcttttgatgtc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttacatcctgagttgatgatctttttttatttgtggctctgcaccctgtcttttgatgtc 211

                  
Query: 362 acattat 368
           |||||||
Sbjct: 210 acattat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)