BAC Information

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BAC

Clone NameMSMg01-308N20
Chromosome14 (Build37)
Map Location 36,978,160 - 36,978,410
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308N20.T7 (MSMg01no308_n20.b1)MSMg01-308N20.TJ (MSMg01no308_n20.g1)
ACCAG432820AG432821
length753756
length of high quality
(start - end)
252 (127 - 378)304 (444 - 747)
definitionCHROMAT_FILE: MSMg01no308_n20.b1 PHD_FILE: MSMg01no308_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:18 2005CHROMAT_FILE: MSMg01no308_n20.g1 PHD_FILE: MSMg01no308_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGAGGAGCCGCGGA
ATTCCAAATGTTCACANAAAAAGAAACTATCTGCAACTGGCAAAACCATG
CCTCTGTTAGAGCAAGATTCAACCCATATTCAGCTGCTGCAAATGCCCTC
TATTCCTGAACCTGGGATTAAAACAAAAACATATTCTACAACATTTCTGT
TTTATTAATCAAAATTTCACCACAGGATAGTCACCAAGTATAAGAGCCTT
TCTCATTGTTAAGACAAGCATAGTAATATGGGATGTATAGCTCCTGGAGA
AGATTAAAGAAACTATTATATGTTTTTTCATAAATAAATACACAAAATTA
AATATCTTTCTGTGTTTTCTTCCCCCACAACCACCAGCTCTCCGCAGACT
CAGACTCACATCCTGTCCACCCTTGATTGTCTGAAGACATTCCTAACATC
TTTATGTGCCTGTAAGCCCTTTAGGGCAGATTCCCCATCTGTTTGAATTA
TCCATGTCATTCACTAATCCAATGCTCTTGGTTGCCATAAGACTAAGCAA
GCACTCTGGGCAACTGAAAGGTTTTTTTTTTTTTTTCTTCTGGAATAAAA
CATGAAATCACAGTCCAATATTTTTTGGTACTCTGAGCAGATTTGGAGAA
ATGTTCATAATTAAAATGGCCAAATTGAATGCTAGCTCTAAAAATTGGTT
TCATTAGTAATTGGAAAATATTTCAATGCATAAGATTATAGATAGTTTGG
CTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCT
GAGAAGCACCTGAAAAAAAGTTCAACCCCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGGCAGAATGAATAAGA
TAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGCTGGTGGGGTTGCAAGCTGGTACAATCACTCTAGAA
ATCAGTCAGGCAGTTCCTCAGAAAATTGTACATAATACTACTGGAAGATC
CAGCAATACCTCTCCTGGGCTTANTCCCNGAACTGGTCCCAACTTCTGGA
CACATGCTCCACTATGTTTGCACCTGGCTAATAATAAAAAAACAGAAGCT
GGAGAGAATCTAGATCCCTCAACAGAAGAATGGATACAGATAATGTGGTA
CATTTACACAATGGATTGCTACTCAGCAATTAAAAAGAATGAATTCATGA
AATTCTTAGGCAAATGGATGGATCTGGAAGATATCCTGAGTGAGGTAACC
CAATCACAAAAGAACATGCATGATATGCACTCACTGAGAAGTGGATATTA
GCCCAGAAACTTAGAATATCCAAGATACAATTTGTAAAACACATGAATTC
AAGAAGGAGGAAGACAGAAGTGTGGATACTTTGTTCCTTTTTAGAATAGG
GAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_n20.b1 MSMg01no308_n20.b1 CHROMAT_FILE:
MSMg01no308_n20.b1 PHD_FILE: MSMg01no308_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:18 2005
         (252 letters)



>mm_chr14_36977960_36978611
          Length = 652

 Score =  387 bits (200), Expect = e-112
 Identities = 238/256 (92%), Gaps = 10/256 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattcagctgctgcaaatgccctctattcctgaacctgggattaaaacaaaaacatattc 60
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tattcagctgctgcaaatgtcctctattcctgaacctgggattagaacaaaaacatattc 260

                                                                       
Query: 61  tacaacatttctgttttattaatcaaaatttcaccacaggatagtcaccaagtataagag 120
           |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tacaacatttcccttttattaatcaaaacttcaccacaggatagtcaccaagtataagag 320

                                                                       
Query: 121 cctttctcattgttaagacaagcatagtaatatgggatgtatagctcctggagaagatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttctcattgttaagacaagcatagtaatatgggatgtatagctcctggagaagatta 380

                                                                       
Query: 181 aagaaactattatatgtttttt-----cataaataaatacacaaaattaaatatctttct 235
           |||||||||||||||||          |||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaactattatatgt-----aaagccataaataaatacacaaaattaaatatctttct 435

                           
Query: 236 gtgttttcttccccca 251
           |||  | |||||||||
Sbjct: 436 gtggatccttccccca 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)