BAC Information

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BAC

Clone NameMSMg01-308P17
Chromosome14 (Build37)
Map Location 14,425,191 - 14,425,484
singlet/doubletsinglet
Overlap geneSynpr
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354
Downstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308P17.T7 (MSMg01no308_p17.b1)MSMg01-308P17.TJ (MSMg01no308_p17.g1)
ACCAG432906AG432907
length740741
length of high quality
(start - end)
321 (45 - 365)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no308_p17.b1 PHD_FILE: MSMg01no308_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:27 2005CHROMAT_FILE: MSMg01no308_p17.g1 PHD_FILE: MSMg01no308_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATCAGATCTTCAAAGAGGACCTAATTGCAATACTCCTCAAACTAT
TCCACAAAATAAAAACAGATTGTACCCTACCCAATTTGTTTTAGGAAGCT
ACAATTACTCTGATACCTAAACCACACAAAAACCCAACAGAGAAAGGGAA
CTTCAGACCAATTTCCCTTATGAATATTGATGCAAAAATACACAATAAAA
TTCTTGCCAACCGAATCCTAGAACACATCAAAACGATCATCCATCATGAT
CAAGTAGGCTTCATCTCAGGGATTCAGGGATGGTTCAATATAGGGAAATC
TATCAATGTAATCTTTTTCTTATACCACCTCACCGACAAAAACCACATGA
TCATCTCATTAGATGCTGACAAAGCATTAGATAAAATACAATACCTCTTC
ATGATAAAAGCCTTGGAAAATTAGGAATTCAAAGCCCATACCTGACCCGT
CCAGCAGGTCCAGTTATTCGAGGGTCTCGAGGGGACTTTCTCTTATGAAC
CAAATGGGGGGAGGGAGAGACAGACACCAAGTGCAGGAACGACACGTAAG
CAATCTGAGTAGCATCAAGGTGTCACTGTATTCAGCAAGGCTCAAGGCTT
ACATGCACAAGCAAAAGGGGAAGTACTTCTCAGCAGGAGGAATGTGGCAG
CGGAAATGCACAGCAAAGGAGGAAGTACTTCTTAGCAGGN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTTAGTGATATGCCC
CTCCCAAACAATTTCACTTCAAGTTACCATGAGCCTCTGGGAAGGTGAGT
TTTCACTGTCAACATGAAGCAATCTAAAACCATCAGGGAAGAGTCTAAAT
AGATAGTTTGAGATCAGGTCAGTCTTTGGGAATGTCTGTGGGAAATTATC
TTAATTCCATTAACTGAGATGTGGATATAAACTCGAAATATGGGTGACAC
CATGTCATGGCTTTAGCTGAATGGATTTGAGAGTCAGCAGAGCAAAGCCA
TGCACAGGTTCATTCNCTTTCNGTTCCNANTCAAGACGCCACGTGCTGCT
TTATTTCTGGCTGCCTTGACCCCCCCACAAAAAAGAAAAATAACCTAGGG
GGGGTAAATAAAGTAAAACCCTCACACATGAACTGCCAGCTTGATAATGC
CATGGCAATTTAGTCACATACTTAAAAATGAAACTAATGGAGTTTCCATG
TTTATTCTCTTACACACACACACAAACACGCTCATGCGAGGGGGCCAGAC
AGACACATACACACAGAGAGAAACAAATGGAGACATAACACATGAAGAGA
GACAACACTTAATCCACATCTGTTCATTCTTTCATGTTCAACCGCCTTCT
AGTGTTAGGTACCTGCTCAAAATTTGCCTATCATAGACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_p17.g1 MSMg01no308_p17.g1 CHROMAT_FILE:
MSMg01no308_p17.g1 PHD_FILE: MSMg01no308_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:27 2005
         (288 letters)



>mm_chr14_14424991_14425684
          Length = 694

 Score =  511 bits (264), Expect = e-149
 Identities = 284/294 (96%), Gaps = 6/294 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagccttagtgatatgcccctcccaaacaatttcacttcaagttaccatgagcct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aaggccagccttagtgatatgcccctcccaaacaatttcacttcaagttagcatgagcct 260

                                                                       
Query: 61  ctgggaaggtgagttttcactgtcaacatgaagcaatctaaaaccatcagggaagagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaaggtgagttttcactgtcaacatgaagcaatctaaaaccatcagggaagagtct 320

                                                                       
Query: 121 aaatagatagtttgagatcaggtcagtctttgggaatgtctgtgggaaattatcttaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatagatagtttgagatcaggtcagtctttgggaatgtctgtgggaaattatcttaatt 380

                                                                       
Query: 181 ccattaactgagatgtggatataaactcgaaatatgggtgacaccatgtcatggct---- 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 381 ccattaactgagatgtggatataaactcgaaatatgggtgacaccatgtcatggctagaa 440

                                                                 
Query: 237 --ttagctgaatggatttgagagtcagcagagcaaagccatgcacaggttcatt 288
             |||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttagctgaatggaaaggagagtcagcagagcaaagccatgcacaggttcatt 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 694
Length adjustment: 9
Effective length of query: 279
Effective length of database: 685
Effective search space:   191115
Effective search space used:   191115
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)