BAC Information

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BAC

Clone NameMSMg01-311J07
Chromosome14 (Build37)
Map Location 99,058,037 - 99,206,308
singlet/doubletdoublet
Overlap geneLOC619716
Upstream geneEG668659, Dach1, LOC635593
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311J07.T7 (MSMg01no311_j07.b1)MSMg01-311J07.TJ (MSMg01no311_j07.g1)
ACCAG434043AG434044
length734709
length of high quality
(start - end)		324 (46 - 369)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no311_j07.b1 PHD_FILE: MSMg01no311_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:28 2005CHROMAT_FILE: MSMg01no311_j07.g1 PHD_FILE: MSMg01no311_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,205,990 - 99,206,308)(99,058,037 - 99,058,329)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGGGTTTTTCTATCTATAAGGACACGTGGCTTGCAAACAGAGA
CAACATGGCTTTCTTCTTTATGGTTCAATTAATTTTATTTCCTTATTTTG
TACAATTCTCTATCTGGGTCATGGAGTGACCATGGCCAATAGCCTGATTT
CTCCTGTGGTGATGTGAAGAATGTCTCTTCACATCAGACTGACTACTAAT
GACAAAGACCAGAGAAACAATTTTTCAGAAATTTCTCCAGAGTCCATCTT
AGGGATCAGGTGAGTTTACTGTATTTACTTATAGGAGTTTGCATGAGTTG
TCACTTACAGAAAACTGTTTTTGTCATCACTCACACCCCCAGTGACAACT
CATAAAGGCTGTACCCCTATCCCCCCCTGCACAACTTTCTGGCAACTCAA
CCTGCTGGGAAGTCTCCTCTCCCTAGTAATTCTTACTGTATACATAAACT
TGGGAGGGATTTGTGAATTTTGTAAGTTTCTGGGCTTCCTGAACCTTTTG
ACTTTCATGAGCTCTGGTCCCACGTTCCAGAAATCTTTTAGTTGAATAAA
ACTCGCTACTTAAATCTGACTTACAGTATTATTGTGGATGAACATGTGGT
GTATTTCTTACTTTTTTCGTTTTGATTTTTTTTTTTTTCTACCCCTTTTT
TATTTCCTTTTTTCCTAAGCCACTTAAGATCCAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGTAATATTCATCTTTGAAAATTA
CTTTTTATAAAAATTTTCTAAAGCATATTTCTAAGTGATGTGTACTACTT
AAAGCTGAGGAATAGACTTGGATATGTCTCTTGTTTCTTCTCACTGCAAT
GTTTTGTTAGAAATTTTAAACCTTCATTTTATATATTCCTATGAGTTTGG
GGTTTGTTCTGTTTGTTTTGAATGTTCTTCTTGTTAGTTTCCACTACAAC
ATGAAGCTTGCCTTTCTACTTCATATTCTGTTCAGTTCTTTGTATATTAA
TCAACTTCCTGTAAGACTTGTTTTGATCTACCCTCCACAATGGTACATTA
AGTCTGAAGTATTCATTGGCCCACCCCCTTAAATGAACATCTGTGAATAG
ATTGGGGTATGTACTGTGAAAGCAAAACCTCTTCACATCTGAAGCACTGA
AGTTGGATGTGATCATTACTAAAAACCGCATCTTAAAATAATTTAATTTT
TGGAAATTAATAACCAAGGGTTGCATTTTTAATTTCCAATGGAACCAATT
TTGGATAAAAAAATATTCCTACCCGAAATTAAATTTTGAACTTTTTTAAC
TAAAGAAAACTAAATCTTTTCAAGGGGAAATCTTTTTGGTTTAACCCCTG
AAGTTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_j07.b1 MSMg01no311_j07.b1 CHROMAT_FILE:
MSMg01no311_j07.b1 PHD_FILE: MSMg01no311_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:28 2005
         (324 letters)



>mm_chr14_99205748_99206471
          Length = 724

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctggggtttttctatctataaggacacgtggcttgcaaacagagacaacatgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaattcctggggtttttctatctataaggacacgtggcttgcaaacagagacaacatgg 502

                                                                       
Query: 64  ctttcttctttatggttcaattaattttatttccttattttgtacaattctctatctggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttcttctttatggttcaattaattttatttccttattttgtacaattctctatctggg 442

                                                                       
Query: 124 tcatggagtgaccatggccaatagcctgatttctcctgtggtgatgtgaagaatgtctct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatggagtgaccatggccaatagcctgatttctcctgtggtgatgtgaagaatgtctct 382

                                                                       
Query: 184 tcacatcagactgactactaatgacaaagaccagagaaacaatttttcagaaatttctcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacatcagactgactactaatgacaaagaccagagaaacaatttttcagaaatttctcc 322

                                                                       
Query: 244 agagtccatcttagggatcaggtgagtttactgtatttacttataggagtttgcatgagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtccatcttagggatcaggtgagtttactgtatttacttataggagtttgcatgagt 262

                              
Query: 304 tgtcacttacagaaaactg 322
           |||||||||||||||||||
Sbjct: 261 tgtcacttacagaaaactg 243


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_j07.g1 MSMg01no311_j07.g1 CHROMAT_FILE:
MSMg01no311_j07.g1 PHD_FILE: MSMg01no311_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:28 2005
         (293 letters)



>mm_chr14_99057837_99058529
          Length = 693

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggtaatattcatctttgaaaattactttttataaaaattttctaaagcatatttctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggtaatattcatctttgaaaattactttttataaaaattttctaaagcatatttctaa 260

                                                                       
Query: 61  gtgatgtgtactacttaaagctgaggaatagacttggatatgtctcttgtttcttctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgatgtgtactacttaaagctgaggaatagacttggatatgtctcttgtttcttctcac 320

                                                                       
Query: 121 tgcaatgttttgttagaaattttaaaccttcattttatatattcctatgagtttggggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaatgttttgttagaaattttaaaccttcattttatatattcctatgagtttggggtt 380

                                                                       
Query: 181 tgttctgtttgttttgaatgttcttcttgttagtttccactacaacatgaagcttgcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttctgtttgttttgaatgttcttcttgttagtttccactacaacatgaagcttgcctt 440

                                                                
Query: 241 tctacttcatattctgttcagttctttgtatattaatcaacttcctgtaagac 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctacttcatattctgttcagttctttgtatattaatcaacttcctgtaagac 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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