BAC Information

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BAC

Clone NameMSMg01-311P16
Chromosome14 (Build37)
Map Location 92,410,313 - 92,410,585
singlet/doubletsinglet
Overlap genenone
Upstream geneEG639558
Downstream geneEG665377, LOC638252
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311P16.T7 (MSMg01no311_p16.b1)MSMg01-311P16.TJ (MSMg01no311_p16.g1)
ACCAG434325AG434326
length736719
length of high quality
(start - end)
282 (45 - 326)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no311_p16.b1 PHD_FILE: MSMg01no311_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:57 2005CHROMAT_FILE: MSMg01no311_p16.g1 PHD_FILE: MSMg01no311_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAGATCATGCCCAGCTGGTTCATATAGTCTGGCTTTAGACATCT
AAGAATGGGTTACACTTACCTGAAGAGATAAAGAATTTCAACATCATGTG
GGGGCTCTGTGAGTCTGACATATTGTTCCTACCAACAGGTAACTCCATTT
TCTTGTTTTAAATTAATATTAGCCATATTAAAGGCATGCATTTTCTACAT
CAAAAAACTCACAGAAATACAGAATCATTGATCTTAAATTCAATTACTAT
TTCATATGCAATATACCCTTATTTTTTATAGAAGAAAATTTCATAAATTT
AAAANTATATTTGNGATAGATTCCCCCCCCCCCCCCATATCGTTTATATA
GTTAAAAATCCTCGTTGTCCACAACCAAANTCATNAAATATTTGGGCGGG
GGGGGGTACTATCGTCTTACCACGAACATCTTTTCTATCCTTGCAACTGC
CTCGCTTCCACTTTTGCTTTACCCACTCGCCCTTAATATTGCCTTTATTT
CCCGATATTCTTCCCCCTTCATTTCCATCTCCTCTCTCTCTCCTCCCTCT
TTCCTCCTCTCTTATTTCTCTTCCCTCACGGTTACACCTCTTGTTCCTGT
CCTTCATCACTTAAATCTTTCTTCTCAAGTAGTTTTTTTTCTTTACCCCC
TCCCCCTTTTCTCCTTTCTGATTTATCCTCTACTCG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACTTGCACATAAGGCTT
GTTTACTAGTTAGGCACAGTGGAAGCCAGCAGCATCTTATAATGGCGATT
GCTCATGGCACGGCTCTCCACATCTCCCCCTTTTTATTTTATTAAAATTT
GAGCCTGGTCTAGGCCTCTGCAGTCATGTCCATCTGCTGTGGCACCTGTC
TTAGGTCATTCCTCCAATGTCACAGCCTTTCCCATCATAGTGTAACCCTA
TCTCCACTGGGTCCAATGTCTTATGTTGGTCTGTACATGAGGAAAGTTGC
CCATCTCTGGATATTGTTTTACTGCCCCGACCCAACTGCCAAATGACCTA
GGACGAACTCTATAAAACCCCCCACCCAAAAAACAAATTAGTAAAGGTCG
GCGTAGTGCAAGTGCTGATCAATGAGCATTGAGTCTCTCTCATCCCAGTG
CAATGTATCCACAAATCCGTGGGACGCAATAGCAGAGAACTCAGATGTCA
TTTAAGTCTTAAGCATGGATAGCCAAATTTCAGGGGAAGCTCCTTGTTCA
ATGGCTGCAAGTTCCTAAGTAATAACGACCTTGTCCGCGGTTTGCTGAGT
TCTGAGCTTTACAACCACCCAGAGCATGATTACTTTTCCACAGCACATGG
TAGCCAGCAATTAAACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_p16.b1 MSMg01no311_p16.b1 CHROMAT_FILE:
MSMg01no311_p16.b1 PHD_FILE: MSMg01no311_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:57 2005
         (282 letters)



>mm_chr14_92410109_92410790
          Length = 682

 Score =  505 bits (261), Expect = e-147
 Identities = 270/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatagatcatgcccagctggttcatatagtctggctttagacatctaagaatgg 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattccatagatcatgcccagctgcttcatatagtctggctttagacatctaagaatgg 418

                                                                       
Query: 65  gttacacttacctgaagagataaagaatttcaacatcatgtgggggctctgtgagtctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gttacacttacctgaagagataaagaatttcaacatcatgtgggggctctgtgagtctga 358

                                                                       
Query: 125 catattgttcctaccaacaggtaactccattttcttgttttaaattaatattagccatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 catattgttcctaccaacaggtaactccattttcttgttttaaattaatattagccatat 298

                                                                       
Query: 185 taaaggcatgcattttctacatcaaaaaactcacagaaatacagaatcattgatcttaaa 244
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 taaagacatgtattttctacatcaaaaaactcacagaaatacagaatcattgatcttaaa 238

                                            
Query: 245 ttcaattactatttcatatgcaatataccctta 277
           |||||||||||||||||||||||||||||||||
Sbjct: 237 ttcaattactatttcatatgcaatataccctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)