BAC Information

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BAC

Clone NameMSMg01-312N07
Chromosome14 (Build37)
Map Location 71,777,659 - 71,991,340
singlet/doubletdoublet
Overlap geneLOC100043136
Upstream genePiwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
Downstream geneLOC668477, LOC668482, LOC675957, Fndc3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312N07.T7 (MSMg01no312_n07.b1)MSMg01-312N07.TJ (MSMg01no312_n07.g1)
ACCAG434939AG434940
length728732
length of high quality
(start - end)
228 (128 - 355)260 (74 - 333)
definitionCHROMAT_FILE: MSMg01no312_n07.b1 PHD_FILE: MSMg01no312_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:00 2005CHROMAT_FILE: MSMg01no312_n07.g1 PHD_FILE: MSMg01no312_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,991,113 - 71,991,340)(71,777,659 - 71,777,916)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGAGGTACTCAAGGCTTACTGCAGAGCCTCTTAGGACTTGAGTGGG
GAAATGGTTAGTTTTGTCCCCCTTATGAACTTGTCTTGATAGAGAGAGGG
GGACCCCCCAAAACATGATTTCAAATGGAGTGAAACCTTTTCTATTTGGG
TGTATCTGTTCCTTAAGAGGGCAAAAGTAGGAATTGGTTCAATTTTCATA
AATCTCAAGAACGTCTTAGTTAAAGCTTCCTTCATACCTGTCCTGAGTTT
TGTGGCATATGTAGTTTCCATTCAAAATTTAGGATCCTGGCCAGATTTGA
GGAAAATGAGTACTTTTCCCCCCCCCCCCCTCAGATTCCAGTGATAGGGG
CTATTCATTCTTCCCCCCCACACTCAAAAAAGAAATTTCTTGGTGGCCAC
TGAAGCCATTTCTGGGTGGGATAGGCTTCCTACCTGAGCAAAGGTATCTA
TGATAACTAACGAGTATGTATACCCCAAAACTATGGCTTTGATATCTGTA
AAGTTCACTTCTTAATGTTTCCCATGGTTACTTCCTCATGCGCAGGTCCT
TTGAGGCTTTCATGCTCCTTTGGGAGTCCTTTGTACTCCTGCAACTCCTC
TGATCCCTACGTTTTATACAAGACTATTCCACCTTAATTCTATTATCCTT
AGATCCCATTTTTACTCTCCTTTTGGTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTGAACCTCGGGTGCATCAAATTT
GATTATTCAGCTAGTATTACATCACTCATTTTCATCATGTTGTTTTTAAA
AATATAAATAGTATGAAGAACACTCAAAAAACCCCTACTAATGCAAATAG
ATGGTAAGTTACTGATATATAATCCCATTACTTACCCATTCCCTTGCATT
TCTTTTTTCCTCTGCCTCATGCTGAATCATGACTTTCTATGGTTTTGCTT
TAGTTTGAGAGCTAGTTCCATTTGCCTCTATGTGGTCCTCCAAAAGAAAC
TCCCCTTTTAATAGATTTCCCCCCCCCCCCCTTTATCAAAGGTATGCAAA
ACAGACTATCTAGCCCCCCCACCTAAAATAAAAAAATGCTACTCTCTGAC
CACATTGCTACAAATTATCAGTTAATTTCCTTGATCTGCTTATAATATTC
TGTCAAGTGGCTTTCCTAAGCTTTCTTCATCTATTCTCCCTTCCACAAAT
TACTGGCCTTTCTTGACTTTTTTTTGTCTGATATTCCGTGATACCTATTT
CATAAACGTCTTTTATGCGTATTTTCATGTTTGCCCTGCTCATTTTTCTC
TTGTGCCCATTTTTACTGGTAAAATCTTTGGCCTTTAATAAATCCTATTA
GTCTACGTTTTATACCATTCCCCTCTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_n07.b1 MSMg01no312_n07.b1 CHROMAT_FILE:
MSMg01no312_n07.b1 PHD_FILE: MSMg01no312_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:00 2005
         (228 letters)



>mm_chr14_71990913_71991540
          Length = 628

 Score =  418 bits (216), Expect = e-121
 Identities = 225/228 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttgtcttgatagagagagggggaccccccaaaacatgatttcaaatggagtgaaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aacttgtcttgatagagagagggggaccccccaaaacatgatttcaaatggagtgaaacc 369

                                                                       
Query: 61  ttttctatttgggtgtatctgttccttaagagggcaaaagtaggaattggttcaattttc 120
           |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 368 ttttctatttgggtgtatctattccttaagagggcaaaaataggaattggttcaattttc 309

                                                                       
Query: 121 ataaatctcaagaacgtcttagttaaagcttccttcatacctgtcctgagttttgtggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ataaatctcaagaacgtcttagttaaagcttccttcatacctgtcctgagttttgtggca 249

                                                           
Query: 181 tatgtagtttccattcaaaatttaggatcctggccagatttgaggaaa 228
           ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 248 tatgtagtttccaatcaaaatttaggatcctggccagatttgaggaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no312_n07.g1 MSMg01no312_n07.g1 CHROMAT_FILE:
MSMg01no312_n07.g1 PHD_FILE: MSMg01no312_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:00 2005
         (260 letters)



>mm_chr14_71777457_71778116
          Length = 660

 Score =  445 bits (230), Expect = e-129
 Identities = 251/258 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgtgaacctcgggtgcatcaaatttgattattcagctagtattacatcactcattttcat 62
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 203 tgtgaagctcgggtgcatcaaatttgattattcagctagtagtacatcactcatttttat 262

                                                                       
Query: 63  catgttgtttttaaaaatataaatagtatgaagaacactcaaaaaacccctactaatgca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catgttgtttttaaaaatataaatagtatgaagaacactcaaaaaacccctactaatgca 322

                                                                       
Query: 123 aatagatggtaagttactgatatataatcccattacttacccattcccttgcatttcttt 182
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 323 aatagatgctaagttactgatatataatcccattacttacccattcccttgcatttcttc 382

                                                                       
Query: 183 tttcctctgcctcatgctgaatcatgactttctatggttttgctttagtttgagagctag 242
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 383 cttcctctgcctcatgctgaatcatgactttctatggttttgctttagtttgagagctat 442

                             
Query: 243 ttccatttgcctctatgt 260
           ||||||||||||||||||
Sbjct: 443 ttccatttgcctctatgt 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)