BAC Information

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BAC

Clone NameMSMg01-313A10
Chromosome14 (Build37)
Map Location 109,382,409 - 109,383,180
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313A10.T7 (MSMg01no313_a10.b1)MSMg01-313A10.TJ (MSMg01no313_a10.g1)
ACCAG435078AG435079
length1,2711,279
length of high quality
(start - end)		767 (134 - 900)377 (73 - 449)
definitionCHROMAT_FILE: MSMg01no313_a10.b1 PHD_FILE: MSMg01no313_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:15 2005CHROMAT_FILE: MSMg01no313_a10.g1 PHD_FILE: MSMg01no313_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTATANNNNNACTCAGTGGGCGCTAAGACTCACTAAGGGAGAGGATC
CGCGGAATTCATGAATACGAAATTACATTGTGTATGTTGGAGGAATGATT
CCTAAAGTAAAGCTACGATACGGTGTAAAACCCATATCGTAGTGATGATA
GCTAACAAACTGAATGACACAAACAGGAAAGCATATATGTAAAAAGAAGT
GTTTGTATATATGCATACACACACTTAGTTTTACATATAAATATGGTAAA
ACTGCCACGTATATTGTATATACAATATACATAAACACACACACATATAC
ATGCATACATACATATATATGCCAATTACCAACAGCAAAAGAAATTATTG
TGCTTGAAGTTTTATGAGAAATCTCACACTATTGAATACACATATATTTT
GCATAAAATTATTGAAAATGTTAGACTATTTAGAATATTAAATATTCTAA
TAAAATATTGGAAATTTAATTCTTGGAAAAATTAAAATAAATACTTCTAA
TTGAAATGTTTGATGTTATTTTATTTACTTAGTTGATTTTTCTGCTTATA
ATGCTTTTCAGCAAAATAAAAATACATTTTTAAATCTAAAATACGTACCA
ATTTGTTTGTAAGTTTTTCTCTTATAGATTACTAAGCATGCAAGTTAAAA
GCAGATTGATTGTCAATATGGTACAATGTATGTGCTTGCTTGAGATCATT
TTGTAATAGCTTCATGGTAATCAGAGCAGTTTCCATTTGAAAAAGTCTCT
GAGTAAGCATAAAATTGTCTGCTCTATTTGGCTATGGCTAGGAAAGGACT
TGACTCCTTACTGGGAGTGTATCTTTTTCTTGACATCATTTTTGTCTTTT
CTACATTTCTGAAATTTAAATGATACTTTTATTTCCTCAGATGACTGAAT
GNAAGGCGAGCCATATCCTAGCTGTGGGAATATGACTGAAGCCAGATCAT
TTTCATCTCTGTTCTATTTATCCCTAGGCCTAAGCATTGAAGCTTCTAAA
CTCTGTACAAAATAATCTTTCCAAACTAACTCAACCAAACCAGCTTTTTT
TGGCTTCTGACTGAATTGCCCTGCTTTTCCCCAAAAAAACTTGGAGAGGA
GACCAAACTTCTGGGTCCTTCCAATTTCCTGGAAAATCTCCCTCGTCTTC
CCGGTAAAAGAGTTACCCCGGGCCCGGTCCCTTAAAATTCCTGTGTAATA
TTTTCATATAAACACCCCACCTCCCCCCCTTAAGAATGCTTATATTTCTT
TCTCCTCCCTGTAGCATAATA

NNNGGCGTCAGTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGGTCTTACCACGTTCCCCATCATCC
TGAAGCAGCTGGTCTGATAGAACCCCGGAATGGCCTTTTGAAGACGCAGT
TACAGCGCCAATTAGGTGGTAACAGCTTGGAAGGCTGGGGTAGAGTTCTT
CAGAAGGCAGTATATGCTTTGAATCAGCGCTCGATATATGGTACAGTTTC
ACCCATAGCCAGGATTCATGGGTGCAGGAATCAAGGGGTGGAAAACGGAA
TAGTTCCACTTACTATCACTCCTAGTGACCCTCTAGGAAATTTTTTGCTT
CCTGTCCCCATAACTCTAGGTTCTGCTGGCCTAGAAGTTTTGGCTCCAGA
GAGGGGAGTGCTCCTACCAGGAGCTACAACAAACATTCTATTGAACTGGA
TTTTTTTACTCCCCCCCGCTCATTTTGGGCTTCTAATGACATAAAAGGGG
GGGGCTAAAAAAGGAATAACAGTGTTAGGAGGGGTGATAGATCCAGATTA
CCATGGGGAAATTGGATTACCTCTTCACAATGGTGGTAAGCAAGATTATG
TCTGGAGTGTAGGAGATCCCTTAGGGTGTCTCTTAGTACTACCATGTCCT
GTGATTAAACTCAATGGGAAACTACAACAGCCTAATCCAAGCAGGATGAC
AAAGGACACAGACCCATCAGGAATGAAGGTATGGGTCAATCCTCCAGGAN
AAGAGCCAAGACCTGCTGAGGTGCTGGATGAAGGTAAAGGAAATACAGAA
TGGGTAGTAGAGGAAGGTAGTTATAAATACCAATTAAGGCCACGTAACCA
GTTGCAGAAATGAGGATTATAAAGTAATATGAATGCCCCATTGTAAATTT
ACAAATGCGTTTGCGATTGTACGAGGGATAGTTATATCATGTTAGGCGTA
TTCACAACCTTGTTATTGTTTCCTGTGAACATGAGAAATTAATTTGTGTC
AAGNTGAACAGGGGGTGAATTGAAATGGGCTATTCCCCGGTTGTCCCCTT
TGATATATTTTGGAATGAACCTACATCCCGGAATTGGAAGAGTTCCCCGG
TGGCCCTTCTTTCTGGAGGCTTAAAAAACCCTTCTCTGGATTTTGGTTGG
AAAACCTTGATCCCCCCCGGGTTTTGTATCCCCAAAAAAAAACTCTCTCC
TTATTGGAAAACACTTTTTATTGTGGTTCCCCCCTTTCTCCTGTTAAAAA
AAAGTGCGGGCCCCCTCCTTTCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_a10.b1 MSMg01no313_a10.b1 CHROMAT_FILE:
MSMg01no313_a10.b1 PHD_FILE: MSMg01no313_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:15 2005
         (767 letters)



>mm_chr14_109382214_109383380
          Length = 1167

 Score = 1431 bits (740), Expect = 0.0
 Identities = 762/772 (98%), Gaps = 5/772 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcgtagtgatgatagctaacaaactgaatgacacaaacaggaaagcatatatgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atatcgtagtgatgatagctaacaaactgaatgacacaaacaggaaagcatatatgtaaa 255

                                                                       
Query: 61  aagaagtgtttgtatatatgcatacacacacttagttttacatataaatatggtaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aagaagtgtttgtatatatgcatacacacacttagttttacatataaatatggtaaaact 315

                                                                       
Query: 121 gccacgtatattgtatatacaatatacataaacacacacacatatacatgcatacataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gccacgtatattgtatatacaatatacataaacacacacacatatacatgcatacataca 375

                                                                       
Query: 181 -----tatatatgccaattaccaacagcaaaagaaattattgtgcttgaagttttatgag 235
                ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tatattatatatgccaatcaccaacagcaaaagaaattattgtgcttgaagttttatgag 435

                                                                       
Query: 236 aaatctcacactattgaatacacatatattttgcataaaattattgaaaatgttagacta 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 436 aaatctcacactattgaatacacatatattttgcataaaattattgaaaatgttagaata 495

                                                                       
Query: 296 tttagaatattaaatattctaataaaatattggaaatttaattcttggaaaaattaaaat 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttagaatattaaatattctaataaaatattggaaatttaattcttggaaaaattaaaat 555

                                                                       
Query: 356 aaatacttctaattgaaatgtttgatgttattttatttacttagttgatttttctgctta 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaatacttctaattgaaatgtttgatgttattttatttacttagttgatttttctgctta 615

                                                                       
Query: 416 taatgcttttcagcaaaataaaaatacatttttaaatctaaaatacgtaccaatttgttt 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 taatgcttttcagcaaaataaaaatacatttttaaatctaaaatacgtaccaatttgttt 675

                                                                       
Query: 476 gtaagtttttctcttatagattactaagcatgcaagttaaaagcagattgattgtcaata 535
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 676 gtaagtttttctcttatagattactaagcatgcaagttaaaatcagattgattgtcaata 735

                                                                       
Query: 536 tggtacaatgtatgtgcttgcttgagatcattttgtaatagcttcatggtaatcagagca 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tggtacaatgtatgtgcttgcttgagatcattttgtaatagcttcatggtaatcagagca 795

                                                                       
Query: 596 gtttccatttgaaaaagtctctgagtaagcataaaattgtctgctctatttggctatggc 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gtttccatttgaaaaagtctctgagtaagcataaaattgtctgctctatttggctatggc 855

                                                                       
Query: 656 taggaaaggacttgactccttactgggagtgtatctttttcttgacatcatttttgtctt 715
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taggaaaggacttgactccgtactgggagtgtatctttttcttgacatcatttttgtctt 915

                                                               
Query: 716 ttctacatttctgaaatttaaatgatacttttatttcctcagatgactgaat 767
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 916 ttctacatttctgaaatttaaatgatacttttatttcctcagatgacagaat 967


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 767
Length of database: 1167
Length adjustment: 10
Effective length of query: 757
Effective length of database: 1157
Effective search space:   875849
Effective search space used:   875849
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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