BAC Information

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BAC

Clone NameMSMg01-316G14
Chromosome14 (Build37)
Map Location 102,200,489 - 102,200,853
singlet/doubletsinglet
Overlap geneLmo7
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3
Downstream geneLOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316G14.T7 (MSMg01no316_g14.b1)MSMg01-316G14.TJ (MSMg01no316_g14.g1)
ACCAG436763AG436764
length740740
length of high quality
(start - end)
372 (40 - 411)383 (74 - 456)
definitionCHROMAT_FILE: MSMg01no316_g14.b1 PHD_FILE: MSMg01no316_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:09 2005CHROMAT_FILE: MSMg01no316_g14.g1 PHD_FILE: MSMg01no316_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAAGATCCGCGGAATTCTT
TATTATTTTCAGTTTTTGGACTCAACAGGTATGCCTCTTGAACATATTTT
TCTCTCATTCTGTCTTTTCATTCTCCTGTCAACGTCTTTTGGAGAACGAA
CACTTTGAATTTTAATGAAGCTTAGCCTGCCAGTTGTCTCTTACAGAGAT
TTTTTTCCCCCCTTTCATTCTGTGTTGTCTCTTAGGAATAAAAGGTGTGT
GATCCATGAGTTTTCTTTGTGGGGTCTGCATCTAAATGTTATTTGTTCTG
ATATGGTATAGAAAAGTCCCTGGTGTTCAATCCACTAGCCTGTAATTCAT
GAGACTGTTCAGAGTCGGAAGATTCTACGGTCAGGTCCCTAAGCTTTGCG
GCATGCCCCCGCAACACTTTAATTTCAAGTTTTTTATTATTTCCCCCTCT
TCCTTTTCCCCTTGCAGGCACTCCCAGTTATTCCTTCTTGTTCTCTTTCA
AATTCATGGCCTGTTTTCTTTAATTGCATATATATATATATATATATATA
TATATATATATATATATATATATATATATCCCTTATCTGTCCTTAGACAG
ATCACTATTACTCAGCATAAGAACATGAAGACTGCTGGGAGAATGCCTCT
CTTAAAATTGTCAGTAAAGCACCCCCCTGAATTCTCTTCAATTTTCCCGT
CCATATTAACACTTCTGTTTCACTGGCTTTATTTTATTCG
CATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTCTTTTGTGAAGACCAAGCCCTTC
ACTTTCTTCTACTTCCTTTTCCTGGGGCTCTCTGCTAGCATGGTAACTTT
CCTAAACTCATTCTCATGGGTGTTTTATGTTTCCTTCTTTTCCTGGTGCT
TTATTGTCTATTAGGTTGGCTACACCTACATTCTAACCCCTCTGAATTTT
CTATTTGTATTTTCAAATTTCCTTTACTTTGAAGTGAATTGTCTAGTCAT
TGTCTAGCCATAAAGGTTATATTCTCCTGACTTTGCTGGATTTTGTTGTT
GGCATTACTCCTGTTTTCTTTTGATCCTATTGGCCCATGCTTGTTTTTCT
CTATTTGTTTACCCCCCCCCCACTTTCCACATATGTCAGGGTCATAGATG
TGTGGAAACAGAAGAAACTCTGCGGTTGATCAGGGCATCATTTTATGAGC
ACAACATAGAATGGAGCGATGGCTACTTCAGGAGTGCATCTCTTCTCATG
GAACTCTTTAAGGATGCTGTTCTCTTTCTCCTGAAAGCAACGCATTTATG
CAAGGAAGTCTTCTACGCGTTCAACATCTGCGTAGGCATAACGGATGCCA
TGCGCTAATAATGGTACTCACCCCAAAAATAATCTGCGCTTGCATCTTAC
AAATACCTTTATCTCCCCTATATACTCGCTTTATATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_g14.b1 MSMg01no316_g14.b1 CHROMAT_FILE:
MSMg01no316_g14.b1 PHD_FILE: MSMg01no316_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:09 2005
         (372 letters)



>mm_chr14_102200285_102201056
          Length = 772

 Score =  632 bits (327), Expect = 0.0
 Identities = 357/367 (97%), Gaps = 3/367 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctttatt-attttcagtttttggactcaacaggtatgcctcttgaacatattttt 62
           |||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattctttattaatttt-agtttttggactcaacagatatgcctcttgaacatattttt 263

                                                                       
Query: 63  ctctcattctgtcttttcattctcctgtcaacgtcttttggagaacgaacactttgaatt 122
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 ctctcattctgtcttttcattctcctgtcaacgtcttttggagaatgaacactttgaatt 323

                                                                       
Query: 123 ttaatgaagcttagcctgccagttgtctcttacagagatttttttcccccctttcattct 182
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 324 ttaatgaagcttagcctgccagttgtctcttacagagattttttt-ccccctttcgttct 382

                                                                       
Query: 183 gtgttgtctcttaggaataaaaggtgtgtgatccatgagttttctttgtggggtctgcat 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 gtgttgtctcttaggaataaaaggtgtgtgatccatgagttttctttgtggggtctgcgt 442

                                                                       
Query: 243 ctaaatgttatttgttctgatatggtatagaaaagtccctggtgttcaatccactagcct 302
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctaaatgttatttgttctgataaggtatagaaaagtccctggtgttcaatccactagcct 502

                                                                       
Query: 303 gtaattcatgagactgttcagagtcggaagattctacggtcaggtccctaagctttgcgg 362
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 503 gtaattcacgagactgttcagagtcggaagattctacggtcaggtccctaagctttgcag 562

                  
Query: 363 catgccc 369
           |||||||
Sbjct: 563 catgccc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)