Query= MSMg01no316_p03.b1 MSMg01no316_p03.b1 CHROMAT_FILE:
MSMg01no316_p03.b1 PHD_FILE: MSMg01no316_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:50 2005
(679 letters)
>mm_chr14_39694286_39695363
Length = 1078
Score = 1241 bits (642), Expect = 0.0
Identities = 666/674 (98%), Gaps = 1/674 (0%)
Strand = Plus / Minus
Query: 6 ggaattcacatgttgtagcactaatctgagcaagtaatctgtaatagttatgtatgtatt 65
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ggaattcacatgttg-aggactaatctgagcaagtaatctgtaatagttatgtatgtatt 820
Query: 66 actgtagaaacagaaaatatattaagaatgagtaagttgctcacataaagaaactcttgg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 actgtagaaacagaaaatatattaagaatgagtaagttgctcacataaagaaactcttgg 760
Query: 126 gtaaagttcaaatgctgtgcaatgttttatctgcctgaataatgtctgctcccagtgaag 185
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 759 gtaaagttcaaatgctgtgcaatgttttatctgcatgaataatgtctgctcccagtgaag 700
Query: 186 tcattaccttcaccagctgtgatcatgtagcagggcttgcccatgcatctcaggtggtac 245
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 699 tcattaccttcaccagctgtgatcatgttgcagggcttgcccatgcatctcaggtggtac 640
Query: 246 tctctcttgaccaattttattggttctcctctattttcacagagttatatatagcaaaga 305
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 639 tctctcttgaccaattttattggttctcctctattttcacagagttatgtatagcaaaga 580
Query: 306 tggttagccatgccttaagaaccactgttcatgtcaaaaggtaattacaaggtgggaatt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tggttagccatgccttaagaaccactgttcatgtcaaaaggtaattacaaggtgggaatt 520
Query: 366 gtgttcagaacaatactgccccatgcaaataaagtggaggggagaatgtaagggaactat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gtgttcagaacaatactgccccatgcaaataaagtggaggggagaatgtaagggaactat 460
Query: 426 gagcagctgtcataaaaccttgcataataacctaagtcatgctgggcactgacatggggt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gagcagctgtcataaaaccttgcataataacctaagtcatgctgggcactgacatggggt 400
Query: 486 aggaagagaataaagttgtgctccttcttcctagattgctgctgcaaatttagcagtgga 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aggaagagaataaagttgtgctccttcttcctagattgctgctgcaaatttagcagtgga 340
Query: 546 aatattgcctctcctgtatgtggttaacagaataaagtgccaggagtaaggagctggtaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aatattgcctctcctgtatgtggttaacagaataaagtgccaggagtaaggagctggtaa 280
Query: 606 gacctgggtaggggatatgtttatgtagaccatatagtaatagcagattttaaggtactc 665
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 279 gacctgggtaggggatacatttatgtagaccatatagtaatagcagattttaaggcactc 220
Query: 666 ttggtccagtgaaa 679
||||||||||||||
Sbjct: 219 ttggtccagtgaaa 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1078
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1068
Effective search space: 714492
Effective search space used: 714492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_p03.g1 MSMg01no316_p03.g1 CHROMAT_FILE:
MSMg01no316_p03.g1 PHD_FILE: MSMg01no316_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:50 2005
(641 letters)
>mm_chr14_39496518_39497559
Length = 1042
Score = 1035 bits (535), Expect = 0.0
Identities = 616/643 (95%), Gaps = 3/643 (0%)
Strand = Plus / Plus
Query: 1 agaagatggcacatgtttcagtttcttttctctggctgtgagaaacactgtgaccagaga 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agaagatggcacatgtttcagtttcttttctccagctgtgagaaacactgtgaccagaga 260
Query: 61 aagttaaggaagagggaacttcctttatctcacgggtccagagggacacgatgacagagg 120
|| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 261 aacttaaggaagagggaacttgctttagctcacgggtccagagggacatgatgacagagg 320
Query: 121 gaaagcatggttgctcaagctcaaagttgagggctcacatcttgaaccacaagcacaaa- 179
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gaaagcatggttgctcaagcttgaagttgagggctcacctcttgaaccacaagcacaaaa 380
Query: 180 gccagtctccagtgaggcacatcctccaacaaggtcccactcctaggacgtctgcaaata 239
|| |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gc-agtctccaatgaggtacatcctccaacaaggtcccactcctaggacttctgcaaata 439
Query: 240 ctcacaatgactagatataaagcacccgagtgctcaagcgtctggggagctttctcattc 299
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcacaatgactagaaataaagcactcgagtgctcaagcgtctggggagctttctcattc 499
Query: 300 acaccactacactacttaatcagactgttggcgagctaaaatgaaagctccagagatgag 359
|||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 acaccattacactacttaaccagactgttggcgagctaaaatgaaagctcccgagatgag 559
Query: 360 gaatgagttaaaatcactaaatagcttacgattccttaccactaacacgaaccacagagg 419
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct: 560 gaatgagttaaaatcactaaatagcttatgatcccttaccactaacacgaaccatggagg 619
Query: 420 gatctcactggatgctcttctttgtgttcatcttagactacattgatcagaaagtgttct 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gatctcactggatgcacttctttgtgttcatcttagactacattgatcagaaagtgttct 679
Query: 480 tagaaaggacttcagtagacacaaaagccgctaaagcaaagacaagcttccctgaagacc 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tagaaaggacttcagtagaaacaaaagccgctaaagcaaagacaagcttccctgaagacc 739
Query: 540 tatctcaagcagacatgtgctgaaagctttatgcaagtgaggtgaagtaactctcacagc 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 740 tatctcaagcagacatgtgctgaaagctttatgcaagtgaggtgaagtaagtctcacagc 799
Query: 600 agcttctcaggaaa-ggaggtgcttctgcaaccctttcatgga 641
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 800 agcttctcaggaaaaggaggtgcttctgcaaccctttcatgga 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space: 651192
Effective search space used: 651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
