BAC Information

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BAC

Clone NameMSMg01-318D08
Chromosome14 (Build37)
Map Location 82,155,140 - 82,155,486
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318D08.T7 (MSMg01no318_d08.b1)MSMg01-318D08.TJ (MSMg01no318_d08.g1)
ACCAG438069AG438070
length753753
length of high quality
(start - end)
349 (70 - 418)341 (69 - 409)
definitionCHROMAT_FILE: MSMg01no318_d08.b1 PHD_FILE: MSMg01no318_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:20 2005CHROMAT_FILE: MSMg01no318_d08.g1 PHD_FILE: MSMg01no318_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAACCGCGGAATT
CCCAGTGGCTTTTCCAATACCCTTTTTCATATCTTTGTATTTTCCTATCT
GAGTATCACATGCTATATATTAATGATTACTATTGTATATTAAAATAAAC
AAATGGGTCCTTGGATGAATACATAAACGTCTACTTGATATAACACCATG
AAATTTCTTCATATGGCTTTTTCAAGATATCGATACATCTCTATATAACT
TTTGTAGCAAATGCATATTTTCTATAAAGCAGCACCAATGGAGTTGAGCC
AACACTTAAGTTTTCACCTGCAAGTGAACATTTAGATGTTGTAATTGTTT
ACAAGAAAGTCACTGTAAGTTTATCAGACATGGATATTGTCTTAGTCAAT
GCTGTATTGCTATGAACACACACCCGCGACCATGGCTTGGGTATTTGAGG
ACTGTGTTCCAATTAATAGATGTTTTTTAGGTACAATCTTGATGAAATGT
CAGTAGAAGTGGATATTGATATATATGCTCATCCTATTTCCAGTATATTT
TCTTTGCTTTATGCCTTCCTTTGATAACATGATCTCCTACTTTGTGATCC
TACTTCCATGCCTTGAAATTATGAATATTTATTTCTCTAAAACCATAAGC
CAAAACAAGCTTTTTTTTTATTTCTATAATTTAATTTGGTCGTAAGTAAT
ACAGAGATTTTCTGTAATAGAACTAAATAAAGCCTTTTTGAGGAGTTTTG
ACT
TCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCGATTCCTGATCTCTCTAGACTTTTAACACGAAGGGG
TGTTTTATTTTGTTAAAGGATTTTTCGGCATCTAATGAGATGATCATTTG
GGTTTTTTTTTTTGTTTTTTTTTTTGTTGTTGTTTTTTTTTCTTTCTTTG
AGTTTGTTTATCTAGTGAATTATCATGACAGATTTCTGTACATTGAACCA
TCCATGTATCCCTGGGATGAAGCCTACTTGATGATGGTGAATGATCATTT
TGAGGTGAGCAGCTCATCTGAAACTCTAGATCAAAAAGAAGCAAATGAAC
GCAAGAGGAGTAGACAGCAGGGAATTATCAAACTTAGTCCTGAAATTAAC
CAAATACAAAATAAACCCCCCCCTCCCAGAATCAATAAAACCAGGAGCTG
TTTTTTTTGAGAAAATCAACAAGATAAACCCTTAGCCAGACTAACAAGCA
GGCACAGAGACAGGACCCAAATTAACAAAATCAGAAATGAAAAGGGAGAT
ATAACAACAAGAACGGAGAAAATCCAAAATATCATCAGATCCTACTACTA
AAGCCTACACGCGACAAAACTGGAAAATCTGGATGAAATGGACAATTTTG
TAGACAGATTATCATGTGCCTAAGTTAAAACAGGATCACACAAACCATCT
AAACATGTCCATTAGTCCTAAGGAAATTGAAGCATTCCTTAATAGTTTCC
CCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_d08.b1 MSMg01no318_d08.b1 CHROMAT_FILE:
MSMg01no318_d08.b1 PHD_FILE: MSMg01no318_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:20 2005
         (349 letters)



>mm_chr14_82154940_82155688
          Length = 749

 Score =  650 bits (336), Expect = 0.0
 Identities = 345/348 (99%), Gaps = 2/348 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctttttcatatctttgta-ttttcctatctgagtatcacatgctatatattaatgatt 59
           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 547 ccctttttcatatctttgtagtttt-ctatctgagtatcacatgctatatattaatgatt 489

                                                                       
Query: 60  actattgtatattaaaataaacaaatgggtccttggatgaatacataaacgtctacttga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 actattgtatattaaaataaacaaatgggtccttggatgaatacataaacgtctacttga 429

                                                                       
Query: 120 tataacaccatgaaatttcttcatatggctttttcaagatatcgatacatctctatataa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tataacaccatgaaatttcttcatatggctttttcaagatatcgatacatctctatataa 369

                                                                       
Query: 180 cttttgtagcaaatgcatattttctataaagcagcaccaatggagttgagccaacactta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cttttgtagcaaatgcatattttctataaagcagcaccaatggagttgagccaacactta 309

                                                                       
Query: 240 agttttcacctgcaagtgaacatttagatgttgtaattgtttacaagaaagtcactgtaa 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 308 agttttcacctgcaagtgaacatttagatgttgtaattgtttacaagaaagttactgtaa 249

                                                           
Query: 300 gtttatcagacatggatattgtcttagtcaatgctgtattgctatgaa 347
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtttatcagacatggatattgtcttagtcaatgctgtattgctatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)