BAC Information

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BAC

Clone NameMSMg01-318G14
Chromosome14 (Build37)
Map Location 98,432,984 - 98,478,186
singlet/doubletdoublet
Overlap geneDach1
Upstream geneEG668659
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318G14.T7 (MSMg01no318_g14.b1)MSMg01-318G14.TJ (MSMg01no318_g14.g1)
ACCAG438222AG438223
length731724
length of high quality
(start - end)		692 (40 - 731)659 (66 - 724)
definitionCHROMAT_FILE: MSMg01no318_g14.b1 PHD_FILE: MSMg01no318_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:35 2005CHROMAT_FILE: MSMg01no318_g14.g1 PHD_FILE: MSMg01no318_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,432,984 - 98,433,672)(98,477,528 - 98,478,186)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATGGTGGGGAGGCAAGAGTGAATAGGTTGGTGGGGTACCACTGTCATAGA
AGCAGTGAGAGGGAGGATGGTATAGGGGGTTTCCGGAGGAGAAAACAGGA
AAGGGGATAACATTTGAAATGTAAAAAAAATAAAGTATTCGATAAAAAAA
TTTTAAAATAACTGTTTGATGCAGAAAGAATGCACACTATATGTTAAGAT
TAAGATGTGTTACTTCAGGAAAATTCTTGTAAAAGCATATATTTATATGA
AGTATGACACAAGAGTCATTTTGGTGAATATAAAAGATATAAAATTTACA
AGCAATGCTTTTTATATTTCCTCCTCTATGTAAATACTTGACCCTCCCTT
TTTCTTCACAACATCCCAACTCATGAAAAATTACATTTTATACTCTACAT
AGGTGAAATTATGCCAATCAAAAGAGTAAAGGTCAATAAATAATTAGACA
ATAGAGATCACACTTCTGTCTTGATCTTAAGAGATTTATTCCTTCATTCT
TCAATTTAAATAATAGTATAAATGGAAGATAGTAATTTTCTATTATGACA
ACAGACTTTAAAGTATCTAAAAAGTATTTCTTAAACATATATTTAGTGTC
AAATTTAAAATTTCATCGGTTTATACCCTTTTCTATAAATAGTATTTTTC
TTTGGAGTCATAGGCAGAATGACCACTAATC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGAAAATCACTTGGGTGGCTGAGAAAATGGTTTATGGATTAG
AGAGAGAACAAGCTAAAACATTTCATACCTTCATCTCTGATAAATTCCCC
AAACTCATTCTTTGCATCTGAGCCATAAATAACAACCATGCTTTTTGCTA
AAAAGAGCTTTTTCCTCCACCAGGTCTTTTGTCTTGGAGATGAATGCTAT
AATAAATTTGAAGTCTTAGGGGGGGCATTGTTTGAACTATAACATTATGG
TTTACAACTGTTGTTTTTATTATGAGGAGGATAAAAAGCCACTCGGAAGC
TTGATCTCTGTCACAGAAACGGATTAATATTTCAGTCTTCAATGTGGGTC
AAGTGTATGACCCCCCCCAAAGCAATTCACTATGATTAATTTTTATTATG
TGAGCATTCAGATTCTCCTTATATTCTTATGTGTTTCATTCCCCTACTGA
CTCACTCCTCACAATACCAGAACTTAGATTCTTCACATAATAGTGAAAAT
GTAGATATTTGAAATCTTAAAATTTTAATGAAACGTCATAGAATTTTTTT
CTGAAAAAATTTTCTCAATAATTATGTGGATAACACACCACATTAGGTGA
GTAAATCACTTTTAATAGTAGCATTTTCCAATAAGTAGTATTAAATATTA
TACTTTAATTGCTAAGTAATATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_g14.b1 MSMg01no318_g14.b1 CHROMAT_FILE:
MSMg01no318_g14.b1 PHD_FILE: MSMg01no318_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:35 2005
         (692 letters)



>mm_chr14_98432781_98433872
          Length = 1092

 Score = 1324 bits (685), Expect = 0.0
 Identities = 688/689 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatggtggggaggcaagagtgaataggttggtggggtaccactgtcatagaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatggtggggaggcaagagtgaataggttggtggggtaccactgtcatagaag 263

                                                                       
Query: 64  cagtgagagggaggatggtatagggggtttccggaggagaaaacaggaaaggggataaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagtgagagggaggatggtatagggggtttccggaggagaaaacaggaaaggggataaca 323

                                                                       
Query: 124 tttgaaatgtaaaaaaaataaagtattcgataaaaaaattttaaaataactgtttgatgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttgaaatgtaaaaaaaataaagtattcgataaaaaaattttaaaataactgtttgatgc 383

                                                                       
Query: 184 agaaagaatgcacactatatgttaagattaagatgtgttacttcaggaaaattcttgtaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaaagaatgcacactatatgttaagattaagatgtgttacttcaggaaaattcttgtaa 443

                                                                       
Query: 244 aagcatatatttatatgaagtatgacacaagagtcattttggtgaatataaaagatataa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagcatatatttatatgaagtatgacacaagagtcattttggtgaatataaaagatataa 503

                                                                       
Query: 304 aatttacaagcaatgctttttatatttcctcctctatgtaaatacttgaccctccctttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatttacaagcaatgctttttatatttcctcctctatgtaaatacttgaccctccctttt 563

                                                                       
Query: 364 tcttcacaacatcccaactcatgaaaaattacattttatactctacataggtgaaattat 423
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcttcacaacatcctaactcatgaaaaattacattttatactctacataggtgaaattat 623

                                                                       
Query: 424 gccaatcaaaagagtaaaggtcaataaataattagacaatagagatcacacttctgtctt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccaatcaaaagagtaaaggtcaataaataattagacaatagagatcacacttctgtctt 683

                                                                       
Query: 484 gatcttaagagatttattccttcattcttcaatttaaataatagtataaatggaagatag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatcttaagagatttattccttcattcttcaatttaaataatagtataaatggaagatag 743

                                                                       
Query: 544 taattttctattatgacaacagactttaaagtatctaaaaagtatttcttaaacatatat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taattttctattatgacaacagactttaaagtatctaaaaagtatttcttaaacatatat 803

                                                                       
Query: 604 ttagtgtcaaatttaaaatttcatcggtttatacccttttctataaatagtatttttctt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttagtgtcaaatttaaaatttcatcggtttatacccttttctataaatagtatttttctt 863

                                        
Query: 664 tggagtcataggcagaatgaccactaatc 692
           |||||||||||||||||||||||||||||
Sbjct: 864 tggagtcataggcagaatgaccactaatc 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no318_g14.g1 MSMg01no318_g14.g1 CHROMAT_FILE:
MSMg01no318_g14.g1 PHD_FILE: MSMg01no318_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:35 2005
         (659 letters)



>mm_chr14_98477328_98478386
          Length = 1059

 Score = 1228 bits (635), Expect = 0.0
 Identities = 653/659 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttgggtggctgagaaaatggtttatggattagagagagaacaagctaaaacatttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 cacttgggtggctgagaaaatggtttatggattagagagagaacaagctaaaacatttca 800

                                                                       
Query: 61  taccttcatctctgataaattccccaaactcattctttgcatctgagccataaataacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 taccttcatctctgataaattccccaaactcattctttgcatctgagccataaataacaa 740

                                                                       
Query: 121 ccatgctttttgctaaaaagagctttttcctccaccaggtcttttgtcttggagatgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccatgctttttgctaaaaagagctttttcctccaccaggtcttttgtcttggagatgaat 680

                                                                       
Query: 181 gctataataaatttgaagtcttagggggggcattgtttgaactataacattatggtttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gctataataaatttgaagtcttagggggggcattgtttgaactataacattatggtttac 620

                                                                       
Query: 241 aactgttgtttttattatgaggaggataaaaagccactcggaagcttgatctctgtcaca 300
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aactgttgcttctattatgaggaggataaaaagccactcggaagcttgatctctgtcaca 560

                                                                       
Query: 301 gaaacggattaatatttcagtcttcaatgtgggtcaagtgtatgaccccccccaaagcaa 360
           |||| ||||||||||||||||||||||||||||||||||||||||  | |||||||||||
Sbjct: 559 gaaagggattaatatttcagtcttcaatgtgggtcaagtgtatgattctccccaaagcaa 500

                                                                       
Query: 361 ttcactatgattaatttttattatgtgagcattcagattctccttatattcttatgtgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttcactatgattaatttttattatgtgagcattcagattctccttatattcttatgtgtt 440

                                                                       
Query: 421 tcattcccctactgactcactcctcacaataccagaacttagattcttcacataatagtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcattcccctactgactcactcctcacaataccagaacttagattcttcacataatagtg 380

                                                                       
Query: 481 aaaatgtagatatttgaaatcttaaaattttaatgaaacgtcatagaatttttttctgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaatgtagatatttgaaatcttaaaattttaatgaaacgtcatagaatttttttctgaa 320

                                                                       
Query: 541 aaaattttctcaataattatgtggataacacaccacattaggtgagtaaatcacttttaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaaattttctcaataattatgtggataacacaccacattaggtgagtaaatcacttttaa 260

                                                                      
Query: 601 tagtagcattttccaataagtagtattaaatattatactttaattgctaagtaatatga 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tagtagcattttccaataagtagtattaaatattatactttaattgctaagtaatatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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