BAC Information

Click to search

BAC

Clone NameMSMg01-319F05
Chromosome14 (Build37)
Map Location 82,642,802 - 82,643,150
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319F05.T7 (MSMg01no319_f05.b1)MSMg01-319F05.TJ (MSMg01no319_f05.g1)
ACCAG438881AG438882
length732733
length of high quality
(start - end)
350 (65 - 414)557 (69 - 625)
definitionCHROMAT_FILE: MSMg01no319_f05.b1 PHD_FILE: MSMg01no319_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:38 2005CHROMAT_FILE: MSMg01no319_f05.g1 PHD_FILE: MSMg01no319_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACAAAGATTGACTAAAAAGTGACAAAATTACAGAATGAGTATTTAGAAAA
AGATTACAGCTTTGCTATGCCCAGTTACCACTAGTGGAAGAAACAGAAGT
TTTCTTGAATTGATAAGAAGAATATGAACCTATTATATGAATAATGTAAC
AAAAGAGTTTCGAAAATTAATAGATGCTAGGCTCAAGATATAACTCAGAA
GTACAATACTTGCTTAGCATTTTAGAGGTCTTTGATTTGAGGATTTGATC
TCTAGAGTAATGGACCAATATATATTAATATATTATATATTAAGAGCCTG
TGATATTAACCTCTGACTCATCTCCTCAGCTCTAACTGGAAGTCTCCATA
TTAAGTTAGAATACCACCCCTACGTATTAGAGGAAGCAGAATGATTTAAT
ATGAGACAAATTTGGTGAGAAAAAGAAGAGTCTTACATTAAAAAGGTGTA
ATACATTAATAAGTGAGCTTAACTCCACAGTGAGTATTAAATAATAAAAA
TAAAATATTTATGAAACAAAGATAAATTATCTAATACAACAATTGAATGA
AAATAGACCCTTAATTTTTGAATGAAGGCAATGGTACGAGTAGATTTATA
TCATAATTGGGTATTTCCCAATGTGTCGTTTGTTCAGCTAGCTTCTGGAA
TTCAAACTGAGAGAGCTTCAGAGGACCCACGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATATATATATATATATGTATATATATATATAC
ACAGAGACACATACACATACACATATATAAAGGTGTTGTGATTGAAATTG
ACAAAAATTTGGGGAGACAGAGTCCCAACTGTCTATCTCTTGTCACCAAA
TGAGGTTTCTTATGCCAGGATTGGGATGCATATAGTTGAATGTTGGACAA
AGGGACTCTTATAGGACTCACAAAAAAGCCCAGTCTCTTTTCAAGGCAAT
AGGTTACACTCCACAAAGTGATAGTGAGCCCCAGTTGGTAAAGACATCAC
TTACAAAATCCTTGAACATAGAGAAGACATGCTTATACCCACATAAAGCC
CCCACCCTATATGCCACCCGCCTTTAGTAAAGAAAGGTACTCTGCAGGCT
ACTAGAAGGACAGTATAAACAACAAACCAGCCACAAATTCTTTGGTTAGC
CAGATATTCTAAGGCAATTATGGCACAAAGCTTATGAAAGTTGCCAACAA
ATAAATGACTTGACTTAAAGCCCATTTCTTGAGATGGAATTCCTAAACTA
CATTCTTTAAATGATCAAGAACTGGAGATTAGGTAACTCATTGACCAAGA
CTAAAACTAAATATGTCTTATTGTTTTTAAAAACAATTAACAATAAAATA
ACTTCTAGTAGTATTTTACTATACTCATAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_f05.b1 MSMg01no319_f05.b1 CHROMAT_FILE:
MSMg01no319_f05.b1 PHD_FILE: MSMg01no319_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:38 2005
         (350 letters)



>mm_chr14_82642699_82643448
          Length = 750

 Score =  629 bits (325), Expect = 0.0
 Identities = 343/349 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagtgacaaaattacagaatgagtatttagaaaaagattacagctttgctatgcccag 60
           |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 452 aaaattgataaaattacagaatgagtatttagaaaaagattacagctttgctatgttaag 393

                                                                       
Query: 61  ttaccactagtggaagaaacagaagttttcttgaattgataagaagaatatgaacctatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttaccactagtggaagaaacagaagttttcttgaattgataagaagaatatgaacctatt 333

                                                                       
Query: 121 atatgaataatgtaacaaaagagtttcgaaaattaatagatgctaggctcaagatataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atatgaataatgtaacaaaagagtttcgaaaattaatagatgctaggctcaagatataac 273

                                                                       
Query: 181 tcagaagtacaatacttgcttagcattttagaggtctttgatttgaggatttgatctcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcagaagtacaatacttgcttagcattttagaggtctttgatttgaggatttgatctcta 213

                                                                       
Query: 241 gagtaatggaccaatatatattaatatattatatattaagagcctgtgatattaacctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 212 gagtaatggaccaatatatattaatatattatatattaagagcctgtgatattaacctca 153

                                                            
Query: 301 gactcatctcctcagctctaactggaagtctccatattaagttagaata 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gactcatctcctcagctctaactggaagtctccatattaagttagaata 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)