BAC Information

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BAC

Clone NameMSMg01-319H15
Chromosome14 (Build37)
Map Location 108,061,735 - 108,062,026
singlet/doubletsinglet
Overlap geneLOC668752
Upstream genenone
Downstream geneEG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319H15.T7 (MSMg01no319_h15.b1)MSMg01-319H15.TJ (MSMg01no319_h15.g1)
ACCAG438990AG438991
length733718
length of high quality
(start - end)
292 (70 - 361)646 (73 - 718)
definitionCHROMAT_FILE: MSMg01no319_h15.b1 PHD_FILE: MSMg01no319_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:49 2005CHROMAT_FILE: MSMg01no319_h15.g1 PHD_FILE: MSMg01no319_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTACTTTTCGGCATGACTGGAGCATGTTTAAATGAAACAAGTAG
TATAAAGACATGTAGATATTGGCCCTATGAATGAGAATAAAAAGATATTC
TCAAAATTTATGTAAGAAGTTGTCTTAAACTTGGGTAATGATCCCTTAGG
TCTTTTCCTAATTGAATGTGTCAGTTATGAAAATTGTGACTAGCACACTT
AATATTTTAATTTGATTTTATATGCCATGTGTACTAACTTGTTTACCTGC
ATCTATCTATGTTGCCGATGTTTTTCACAAGGAAGCATAAGATAGCCTGG
AACTGGGGTTATTTATGTTTCCCACCCCACCCCGCGTTGGAGTAAACCAA
ACTATGTCTGCAGCCCACCTCCTCTTCACACAGAGCCAGAGAGCTATATA
TCTCTAGTAGTAATACCGAACTGTTGAATTAAATAATTACTGAAAAAAAC
CCGGTGGAGGTTCACTATCCAGCTCAACGCTTTAGGTAAGACACTCACTC
AGCCTTTATATTTTAATATACCTTAATCTTGCACAATATCTGAGCCACTG
TCAAATCTCCACTTGGTTAATCCCATCTCCCACCAGTTAGTCCCAAATTA
TTACCTATTTAAACTCTCTTATTCTATTTTCGGTGGTTCTGTATTTCCTT
ATGGTTTGTCTTACTTGGGTACTTTGCTTCTTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGTTGAAGAAGTATCTGGATGGCCTT
TCCTTCAGTCTCTTTCATTTCTGTCCCTGCATTTTCTTTAAACAGGAAGA
ATACTGGGTCAAGAATTTATAAGATGGTAGGGTGGCCTCATGCTTCAAAA
GGGGGCTGTGTCTATCTATTAAAGGTGGTAATTTAGTTTATGTCTCCCTA
CTATTGGACATTTCAGCTAAAGTTATCCCCACTGGGTTCTAGGAGTCTTT
CACATCCAAGATGTCTGGGAGTTTCTAGAGGTTCCTGCTCTATCACCCCT
CCCCTGCCTCCAATACCAAACTGCTGCATATTTCTATTCATTTTACTGGC
CCTCTGGGGTTCTTCCCCGCCTCCACACATACCTGATCCTGTACTACATT
TTCTCTCTCCTGCTCTTCTTAAACACCCAGGTCTCTCCCTCCCTGTGACA
CTCACAATGGTTTTGTTCCCCATTCTAAGTGAGATTGAAGAGTCCACACT
TGGGCCTCCCGTCTTGTTAAGCTTCATGTGGTCTTTGAGTTGTATCATGG
GTATTCTGAACTTTTTTGGGTAACATCAAACAGTGAGTACATACCTTGTA
TGTACTTTTGGCTCTGGGTTACCTCATACTGGATGGTATTTTCTAGTTTA
TAAATTATTCCATTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_h15.b1 MSMg01no319_h15.b1 CHROMAT_FILE:
MSMg01no319_h15.b1 PHD_FILE: MSMg01no319_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:49 2005
         (292 letters)



>mm_chr14_108061535_108062226
          Length = 692

 Score =  518 bits (268), Expect = e-151
 Identities = 286/296 (96%), Gaps = 8/296 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactggagcatgtttaaatgaaacaagtagtataaagacatgtagatattggccctatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tgactggagcatgtttaaatgaaacaagtagtataaagacatgtagatattggcactatg 260

                                                                       
Query: 61  aatgagaataaaaagatattctcaaaatttatgtaagaagttgtcttaaacttgggtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgagaataaaaagatattctcaaaatttatgtaagaagttgtcttaaacttgggtaat 320

                                                                       
Query: 121 gatcccttaggtcttttcctaattgaatgtgtcagttatgaaaattgtgactagcacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gatcccttaggtcttttcctaattgaatgtgtcagttatgaaaattgtgactagcgcact 380

                                                                       
Query: 181 taatattttaatttgattttatatgccatgtgtactaacttgtttacctgcatctatcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatattttaatttgattttatatgccatgtgtactaacttgtttacctgcatctatcta 440

                                                                   
Query: 241 tgttgccgatg----tttttcacaaggaagcataagatagcctggaactggggtta 292
           |||||||||||    |    ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttgccgatggaagt----cacaaggaagcataagatagcctggaactggggtta 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)