Query= MSMg01no319_l14.b1 MSMg01no319_l14.b1 CHROMAT_FILE:
MSMg01no319_l14.b1 PHD_FILE: MSMg01no319_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:06 2005
(667 letters)
>mm_chr14_108219063_108220131
Length = 1069
Score = 1104 bits (571), Expect = 0.0
Identities = 641/665 (96%), Gaps = 2/665 (0%)
Strand = Plus / Minus
Query: 5 gaattcattctttctatccaagttttactagcatgcgttgtctacactgggtacattttg 64
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaattaattctttctattcaagttttactagcatgcgttgtctacactgggtacattttg 810
Query: 65 ttctatacaactcctacggcatagttgtgagatatgtgctcaaggtcacagcttaaatga 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttctatacaactcctaaggcatagttgtgagatatgtgctcaaggtcacagcttaaatga 750
Query: 125 aatttctgctctcttgctagagtagcattaaatgtttcccaactctatgtgtgttctaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 749 aatttctgctctcttgctagagtagcattaaatgtttcccaactctatgtgagttctaag 690
Query: 185 aataactgaatctttttgctctcaagcaattttcctttgcatggcctctcgaattttatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aataactgaatctttttgctctcaagcaattttcctttgcatggcctctcgaattttatt 630
Query: 245 atattcatgttcagcttagtattcagtcaaacacttcagtgcattcctcttatttattct 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 629 atattcatgttcagcttagtattcagtcaaacacttcaatgcattcctcttatttattct 570
Query: 305 tggaactcttttcaagaca--tttttctgcttacttttgcttcttgtcttcatagatttc 362
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 569 tggaactcttttcaagacatttttttctgcttacttttgcttcttgtcttcctagatttc 510
Query: 363 aattatcttcaccccccccactcttcactttgtcttctatgcaacaaaacaattgtgttt 422
||||||||||| | | ||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 509 aattatcttcatctttcttactcttcacgttgtcttctatgcaacaaaacaatcgtgttt 450
Query: 423 tccctgagtttcaaatcttaggctgcacttacagaaattagctccaaataaaataataac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tccctgagtttcaaatcttaggctgcacttacagaaattagctccaaataaaataataac 390
Query: 483 ttaagcttgggcatttcaaacagctttccctattgcttgagatttctttaaaaatccgaa 542
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 389 ttaggcttggacatttcaaacagctttccctattgcttgagatttctttaaaaatcttaa 330
Query: 543 taatttgctgatgttctgtgtcataatgaatattctcatactgatttttggttatagagg 602
|||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 329 taattttctgatgttctgtgtcataatgaatattctcatactggtatttggttatagagg 270
Query: 603 gaaaggtgcaacctggttgtgataggactataagcaaaatttttattcactaattttagt 662
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaaaggtgcaacctggttgtgaaaggactataagcaaaatttttattcactaattttagt 210
Query: 663 gaacg 667
|||||
Sbjct: 209 gaacg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1069
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1059
Effective search space: 695763
Effective search space used: 695763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no319_l14.g1 MSMg01no319_l14.g1 CHROMAT_FILE:
MSMg01no319_l14.g1 PHD_FILE: MSMg01no319_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:06 2005
(344 letters)
>mm_chr14_108072202_108072948
Length = 747
Score = 621 bits (321), Expect = 0.0
Identities = 338/345 (97%), Gaps = 3/345 (0%)
Strand = Plus / Plus
Query: 3 tagtggcaggtgtgctgaattaataaattgttgttttatgaaatataactattatacaaa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tagtggcaggtgtgctgaattaataaattgttgttttatgaaatataactattatacaaa 262
Query: 63 tattaaatatacatctacaaattggataatgtttatgcaagtgtgaagcatgttcatatg 122
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 263 tattaaatatacatctacaaattggataatgtttatgtaagtgtgaagcatgttcatatg 322
Query: 123 gatagtcacaccttgtgtgtgcttggctgtgcatactctcaggctggggggg---cattg 179
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 323 gatattcacaacttgtgtgtgcttggctgtgcatactctcaggctggggggggggcattg 382
Query: 180 catgaccttgtttatcactctctcctgtgttcttagaaatatgcttttttgagaatataa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catgaccttgtttatcactctctcctgtgttcttagaaatatgcttttttgagaatataa 442
Query: 240 taatagaaataatcacattgttcctgttccatattctttctcctgtccgttcttgaaatc 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taatagaaaaaatcacattgttcctgttccatattctttctcctgtccgttcttgaaatc 502
Query: 300 catcttgattactcttaagtgcatgttctctgtttcttttacttt 344
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 catcttgattactcttaagtgcatgttctctgtttcttttacttt 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 747
Length adjustment: 9
Effective length of query: 335
Effective length of database: 738
Effective search space: 247230
Effective search space used: 247230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
