Query= MSMg01no321_g14.b1 MSMg01no321_g14.b1 CHROMAT_FILE:
MSMg01no321_g14.b1 PHD_FILE: MSMg01no321_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:09 2005
(318 letters)
>mm_chr14_108498221_108498938
Length = 718
Score = 553 bits (286), Expect = e-162
Identities = 310/318 (97%)
Strand = Plus / Plus
Query: 1 gaacaaaggtagaggagcaagagcaaaaatttatgcaagacttagacaaattctcatgca 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacaaaggtagaggagcaagaggaaaaatttatgcaagacttagacaaattctcatgca 260
Query: 61 acatacttgagcatctgaacaatatgcagtaagtggaaaatgagcatgaaaaaaagatat 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatacttgagcatcttaacaatatgcagtaagtggaaaatgagcatgaaaaaaagatat 320
Query: 121 gatcgattaagggacaaaaagaataaaatcatcaatttgaattggatcaaatggcattgg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gatcgattaagggacaaaaagaataaaatcatcaatttgtattggatcaaatggcattgg 380
Query: 181 gttaagtagttggtgtgtacaatggacttaaacaaaaaaggaatagattatgtaaatcag 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gttaagtagttggtgtgtacaatggacttaaacaaaaaaggaatcgattatgtaaatcag 440
Query: 241 taaaggagaattactgtatttgtttttctacatttctgctgaagaatataactgcagaaa 300
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 taaaggaggattaccgtatttgtttttctacatttctgctgaagaatataactgtagaaa 500
Query: 301 taacaagatatgttagga 318
|||||| |||||||||||
Sbjct: 501 taacaatatatgttagga 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_g14.g1 MSMg01no321_g14.g1 CHROMAT_FILE:
MSMg01no321_g14.g1 PHD_FILE: MSMg01no321_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:09 2005
(527 letters)
>mm_chr14_108650301_108651227
Length = 927
Score = 903 bits (467), Expect = 0.0
Identities = 513/535 (95%), Gaps = 15/535 (2%)
Strand = Plus / Minus
Query: 1 atgtat--tatagtaagattggtcataagtccatggctgggatggtgattgaaattgggt 58
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atgtattctatagtaagattggtcataagtccatggctgggatggtgattgaaattgggt 550
Query: 59 gagccaactattgcttagttaaatggtcgttttgtcaaagtaccctctctgtattcaggt 118
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 549 gagccaactattgcttagttaaatggtcgttttgtcaaagtgccctctctgtattcaggt 490
Query: 119 tttccatataggaaaatggaatatcccacaaaggaataggagctattctcaacattgctg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tttccatataggaaaatggaatatcccacaaaggaataggagctattctcaacattgctg 430
Query: 179 gtagaaacttctttttatatcaggcatcagtcaaagtggagttgtataactggttaaagt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtagaaacttctttttatatcaggcatcagtcaaagtggagttgtataactggttaaagt 370
Query: 239 tgtgaaaatgaatggcttagtgttcagctgtaaatagaacatcttccttcaagtgaacac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtgaaaatgaatggcttagtgttcagctgtaaatagaacatcttccttcaagtgaacac 310
Query: 299 tgttagtctgttcatgttctaatgagtggtcctacacccatgaccccaca----taatta 354
|| ||| |||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 309 tgctaggctgttcatgttctaatgagtggtcctacacccatga----a-atatgtaatta 255
Query: 355 gatttagtggattgttaatgaagataatttatgtggaaggagactgaaggagctggaggg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gatttagtggattgttaatgaagataatttatgtggaaggagactgaaggagctggaggg 195
Query: 415 aaaattttgggttctggagattatcgtatttcatagcacatgtgtatgaaactgtcaatt 474
||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 194 aaaatttggggttctggagataaccgtaattcatagcacatgtgtatgaaactgtcaatt 135
Query: 475 attaaaattac----gtgtcaatgaaaacatcaagtgacaatattatatcacgta 525
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 attaaaattacataagtgtcaatgaaaacatcaagtgacaatattatatcacgta 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
