BAC Information

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BAC

Clone NameMSMg01-321N16
Chromosome14 (Build37)
Map Location 112,227,971 - 112,228,171
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321N16.T7 (MSMg01no321_n16.b1)MSMg01-321N16.TJ (MSMg01no321_n16.g1)
ACCAG440714AG440715
length745743
length of high quality
(start - end)
121 (186 - 306)205 (114 - 318)
definitionCHROMAT_FILE: MSMg01no321_n16.b1 PHD_FILE: MSMg01no321_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:41 2005CHROMAT_FILE: MSMg01no321_n16.g1 PHD_FILE: MSMg01no321_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCTGTCCAGAGACCCATTTTTTAATGGGGTTATTTGATTTTCT
GAGACAAATGAGACTTACTGCCCCTCCGAATTTTCTGCAAGGCAAAAGAC
ACCGTCTGTAAGACGAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC
CTATCCTAAATCAGATAGGGGACTAATTTCCGACATATATAAAGAACTCA
TTTTATATTTCTAATGGTTTTCTTTTTAAAGTATTATTTTGTACACATAC
ATATATGAAAGACACAATCTGATGATCCTATTTAGTGGTGTTTGTATGAT
TACAATTTTATAGATAATTTCCCTCGCCCCCCCCCCCTGCTTAGAGGGCT
CATTCTTGACAAAAGTTCCCACCCAACGCAAAAAAAATGGCTTGCAGCTC
AACATAGAAGGGCCAATGTATATCACAACGAAGTTCACGTTACATTGGCC
TTGTTAAAGCTGTTATTATTGAAATTTCGTGAGAGAAGCTTCCCTGTTAT
TTTTCGAAGACAAATATCTCTCAGTAGATGTCTGATCCTCTGAATCTTAT
ACACTTTAGATCACCTGTTCCAAATTGTTTCCTGAGATTTAACTGAAGCG
CTGCGCTTTAAATTTCCAAAGTTGGGTTGGATTGGGTCCCCTACTGGGAG
TTGATCTTGTCATTATACACACGGTGCGGTTACTGAGTTTCTTGT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAAAAACCTACACAGTTACTTGTTGACT
TACCCATGAACCAATGTAATTCTCAAAAACCTACACAGTTACATGTTGAC
TTACCCATGTAAATTGGGGAATCTTTAAAGGACTACCCCCAAATGAAGAG
ATCCAGGCAATTACAGGTTACTCAGACGATGATAATCTGTAGAAATGAGT
CCCCTGTTAGGTCATTCCTAAATACAAACATGTAGTGGAATAACAAAATG
GACTCAGTAGGGGATACACTTTCTCACACACACACACACGTATAGATTAC
ATGAATTTACATTTATTTAATGCCTCTCCACACACATGTACATAAAATAT
ATATTTGTCATTTCTCTCCCACCCGTATAAAATCTATTGGTTTATAATGG
ACATTAATAATACATTGACTGAATATTACCTACATCTTTCTGTGTATTTT
CATATTTACTGAGGATGTTATTTCTCTTAGATAAGGAGTTGTCTATGTGC
TCTGTCCAATTTCAGTTCCCGGGATTTCAGTGAAAACTTTGTCAGGGTGT
GCTTATAAATACTGACATCGTGTATTTGCATTGAGCAATATGAATTACTG
TAGAAAGTTTTATGAAAAATATTATAATTTTGGGATGTGACAAGTAAAAT
GTGAATAATTTATAATTTCCAAAAAAAAGAGCACGATTTGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_n16.g1 MSMg01no321_n16.g1 CHROMAT_FILE:
MSMg01no321_n16.g1 PHD_FILE: MSMg01no321_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:41 2005
         (205 letters)



>mm_chr14_112227767_112228371
          Length = 605

 Score =  366 bits (189), Expect = e-106
 Identities = 198/201 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   aattctcaaaaacctacacagttacatgttgacttacccatgtaaattggggaatcttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aattctcaaaaacctacacagttacatgttgacttacccatgtaaattggggaatcttta 264

                                                                       
Query: 65  aaggactacccccaaatgaagagatccaggcaattacaggttactcagacgatgataatc 124
           ||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 265 aagtactacccccaaatgaagagatccaggcaattaaaggttactcagacaatgataatc 324

                                                                       
Query: 125 tgtagaaatgagtcccctgttaggtcattcctaaatacaaacatgtagtggaataacaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtagaaatgagtcccctgttaggtcattcctaaatacaaacatgtagtggaataacaaa 384

                                
Query: 185 atggactcagtaggggataca 205
           |||||||||||||||||||||
Sbjct: 385 atggactcagtaggggataca 405



 Score =  223 bits (115), Expect = 8e-63
 Identities = 124/127 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   aattctcaaaaacctacacagttacatgttgacttacccatgtaaattggggaatcttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  aattctcaaaaacctacacagttacatgttgacttacccatgtaaattggggaatcttta 139

                                                                       
Query: 65  aaggactacccccaaatgaagagatccaggcaattacaggttactcagacgatgataatc 124
           ||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 140 aagtactacccccaaatgaagagatccaggcaattaaaggttactcagacaatgataatc 199

                  
Query: 125 tgtagaa 131
           |||||||
Sbjct: 200 tgtagaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)