BAC Information

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BAC

Clone NameMSMg01-322B20
Chromosome14 (Build37)
Map Location 19,721,782 - 19,722,099
singlet/doubletsinglet
Overlap geneUbe2e2
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963
Downstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322B20.T7 (MSMg01no322_b20.b1)MSMg01-322B20.TJ (MSMg01no322_b20.g1)
ACCAG440898AG440899
length728725
length of high quality
(start - end)
317 (46 - 362)314 (380 - 693)
definitionCHROMAT_FILE: MSMg01no322_b20.b1 PHD_FILE: MSMg01no322_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:00 2005CHROMAT_FILE: MSMg01no322_b20.g1 PHD_FILE: MSMg01no322_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTACCATACCGAATGGCAGAGAAGCACCTGAAAAAATGA
TCAACATCCTTAATCATCAGGCCCATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACTGTAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGATTATGTCCCAACTGCCAACAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATCCACAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAGTTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTACTCACTGATAAGTGGACATTAGCCCCAAACCT
AGTATACCCAAGATATAACATATAATTTGCTAAACACATGAAACTCAAGA
AGAATGAAGACTGAAGTGCGGACACTAT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAACCTCTAGGGAGATTTCCTCCA
GACTGGGAAAAAAGGAATCCCTCAGTGTCTCGGTACACTCTCTATCTGTT
GTGCAACATGGTTGCCTAGTCGAGCTGGATCAGAGCCCACACCCTCCTAA
GCTTCAGTTCTTATTTAGGATCACATGGTTTCTGTTCTGTTATCACAAAG
GTTACTTAAAACAATTTCCCAGCTTAGAGGATTTTAAGCTTGGCTCAGCT
CTAAGGATGTATTGATTGTATATTAGCGTGGCAGTACCACTCTCTCTCAG
CCCTGTGTCTTTTTACACCGACTTGTCAGGACACTTTGCAGGTCTCTTTA
CCTGTCTGGACATCCCACACCTGAGCCCAAAATGCTTCTCCCAGTGCCTA
TAAAAATTAGGCTCTCAGTCCTTTCTCCCCCCCCCCCTATTTAAAATACT
TATTTTATATTCTGTGTATCGATGTTTGTTTGCATGTATGTCGTGCACCA
TATATATGCCTGGGTGCCGAGGGAGGCCAGAGAGGGTGTCATATCACCTG
GAACTGGAGCTATAGCCCATTGTGAGTTACCATGTATGTGTTAGGAATTG
ATTCCAGTCTCTCTGGAAGAGCAGCCAGTTTTCATAACCCCTGAACTCTC
TCTCCAACCCCTTCTGGTTTATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_b20.g1 MSMg01no322_b20.g1 CHROMAT_FILE:
MSMg01no322_b20.g1 PHD_FILE: MSMg01no322_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:00 2005
         (314 letters)



>mm_chr14_19721773_19722490
          Length = 718

 Score =  565 bits (292), Expect = e-165
 Identities = 310/318 (97%), Gaps = 4/318 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacactttgcaggtctctttacctgtctggacatcccacacctgagcccaaaatgcttct 60
           ||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 327 gacactttgcaggtctctttacctgtctggacatctcatagctgagcccaaaatgcttct 268

                                                                       
Query: 61  cccagtgcctataaaaattaggctctcagtcctttct----ccccccccccctatttaaa 116
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 267 cccagtgcctataaaaattaggctctcagtcctttctctccccccccccccctatttaaa 208

                                                                       
Query: 117 atacttattttatattctgtgtatcgatgtttgtttgcatgtatgtcgtgcaccatatat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atacttattttatattctgtgtatcgatgtttgtttgcatgtatgtcgtgcaccatatat 148

                                                                       
Query: 177 atgcctgggtgccgagggaggccagagagggtgtcatatcacctggaactggagctatag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 atgcctgggtgccgagggaggccagagagggtgtcatatcacctggaactggagctatag 88

                                                                       
Query: 237 cccattgtgagttaccatgtatgtgttaggaattgattccagtctctctggaagagcagc 296
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 87  cccattgtgagttaccatgtgtgtgttaggaattgattccagtctctctggaagagcagc 28

                             
Query: 297 cagttttcataacccctg 314
           ||||||||||||||||||
Sbjct: 27  cagttttcataacccctg 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 718
Length adjustment: 9
Effective length of query: 305
Effective length of database: 709
Effective search space:   216245
Effective search space used:   216245
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)