BAC Information

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BAC

Clone NameMSMg01-322G19
Chromosome14 (Build37)
Map Location 69,309,614 - 69,309,861
singlet/doubletsinglet
Overlap genenone
Upstream geneCdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033
Downstream geneLOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322G19.T7 (MSMg01no322_g19.b1)MSMg01-322G19.TJ (MSMg01no322_g19.g1)
ACCAG441124AG441125
length750754
length of high quality
(start - end)
252 (73 - 324)678 (77 - 754)
definitionCHROMAT_FILE: MSMg01no322_g19.b1 PHD_FILE: MSMg01no322_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:23 2005CHROMAT_FILE: MSMg01no322_g19.g1 PHD_FILE: MSMg01no322_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAATCCGCGGA
ATTCAACTGAAATACCCGAAGAGAAGGGGGGGGCGTTGATACTACTAAAA
TACTTTATCACTTGCAACCCCAAAGATGAGGAAATAAGTTTTCCAGGTTC
CATAGGGATTTGACCCCATAGAGGTATTCTCTTATTTACCTTTAAATTTT
TTTCTCAGATAAGTTCCAATTTTAAGTGGTTTTCTAAAGTAGATTTCATA
GGATATTTTCCCATTTACATTATGAGCTATTATTTCTTTCAGAAAGAATA
TTTACCAATTTTCATGTACAAGTACTAGTATCAAATTGGTTCTAAACAGC
CATCAAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTCTTTCTTCCTTTCTCTTTTTGATGCTGTCATTCAGTTTTTCATT
CACTCTTCCATTTCTTGCTTGTGACAATATTACTCTGCAACCCAGGCTAG
CCTCCTATGCATTTTGTAACCTAGGCTGGCCTTGAGCTACTGGCAATCCC
CCTGTGTCAGCCTCCTCCTGAGGACTGAGATTGCAGACATGTGCTACCAT
ATGGGGGCCCAGCAATTTCTTGATTTTCCTGCTTTGTATTTAACCTGTAT
GTAATAATAATATCTCTCAATTCTCTTCTAAAATATCTTTACATTAATTT
ATACATTAATGCATTCATTTATTCTGATTGGAGCCACCCTACCCCATGTC

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTT
TTAATGGGGTTATTTGATTTTCCGGAGTCCACCTTCTTGAGTTCTTTATA
TATGTTGGATATTAGTCCCCTATCTGACTTAGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGGCCTTTTTGTCTTGTTGACGGTGTCTTTTGCCTTG
TAGAAGCTTTGCAACTTTATGAGGTCCCATTTATCGATTCTTGATCTTAC
AGCACAAGCCATTGCTGTTCTATTCAGGAACTTTTCCCTTGTACCCATAT
CTTCGAGGCCTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGT
TTTATGTGGAGTTCCTTAATCCACTTATATTTGACCGTAGTACAAGGAGA
TAGGAATGGATCAATTCGCATTCTTCTACATGATAACCGCCTTCCTTCCT
TTTTCTTTTTCTTTCTCTTTTTCTTTTTCTTTCTCTTTCTCTTTCTCTTT
CTCTCTCTCTTTCTCTCTTCCTCTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCCCTCTCTCTTTCTCTCTTTCTTTCTTTCTTTTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_g19.b1 MSMg01no322_g19.b1 CHROMAT_FILE:
MSMg01no322_g19.b1 PHD_FILE: MSMg01no322_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:23 2005
         (252 letters)



>mm_chr14_69309410_69310061
          Length = 652

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gggggggcgttgatactactaaaatactttatcacttgcaaccccaaagatgaggaaata 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gggggggcattgatactactaaaatactttatcacttgcaaccccaaagatgaggaaata 264

                                                                       
Query: 65  agttttccaggttccatagggatttgaccccatagaggtattctcttatttacctttaaa 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agttttccaggttccataaggatttgaccccatagaggtattctcttatttacctttaaa 324

                                                                       
Query: 125 tttttttctcagataagttccaattttaagtggttttctaaagtagatttcataggatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttttctcagataagttccaattttaagtggttttctaaagtagatttcataggatat 384

                                                                       
Query: 185 tttcccatttacattatgagctattatttctttcagaaagaatatttaccaattttcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcccatttacattatgagctattatttctttcagaaagaatatttaccaattttcatg 444

                   
Query: 245 tacaagta 252
           ||||||||
Sbjct: 445 tacaagta 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)