BAC Information

Click to search

BAC

Clone NameMSMg01-322J23
Chromosome14 (Build37)
Map Location 104,760,173 - 104,760,509
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322J23.T7 (MSMg01no322_j23.b1)MSMg01-322J23.TJ (MSMg01no322_j23.g1)
ACCAG441269AG441270
length724724
length of high quality
(start - end)
677 (46 - 722)337 (388 - 724)
definitionCHROMAT_FILE: MSMg01no322_j23.b1 PHD_FILE: MSMg01no322_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:37 2005CHROMAT_FILE: MSMg01no322_j23.g1 PHD_FILE: MSMg01no322_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGTATTTTCCTACTTTGAGTATGGTCAAATAAAAGGACTTTTC
TTTTTAAGACTTATTTATTTATCTTATGTGAGTGCACTGTCACACTCTTC
AGACACACCAGAAGATGGCATCAGATCCCATTACTGATGGTTGTGAGCCA
CCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTTGAAAAGCAGTCAGT
GCTCTTACCTGCTGAGCCATCTCTCCAGCCCAAAAGAACTTATTTTTAAG
TTAGTATTTATATTAGTTACTTTTTGTTGCTGTGATAAAAAACACCAGGA
ACAAAAGTGACTAAGGGAGGAAAGAGACTATGTTGCCTTATGGTTCCAGA
AAGGGAGTCCATAATGGTGGAGGAGGAATGGCAGTAGGGGCTGGAGCAGA
AGGCAGAGAGAGAAGGTGAATTGGAAGTGAGGGATGCTATACATTCTCAA
AGCCTTAGTGATATACCTTCTCCAATAAGGCCTCCATTCTTAAAGTTTCC
TTAATCTTCCCAAAATACTGTAGCTATCCTGAGTCCAACTTTCAACATAC
CCGAGTTTATGGGGACATTTCTCATTCAAACCCCCACATTGCACTCCTTG
CCTTCAGTAAGCCATGTCCTAACACAAATGAATATACTGCTATTTTTAAA
GTCTTAATGGCTTTTTGCTATCTN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTACTCACAAGCAGCTTAGCTTTT
GTTTGTTTGGCTTTGTTTGTTCAGTCGGTTGGCTGGTTTAAGCTCTGCTC
CCCGACCTTTGGTTTTATGAAGCAGGCTCTCACTTTGTAGTCTTGGTTGA
CCTAGAACTCCTAGGAAACCGCTTGCCTCTGCTTCGGCTGCTGGAGTGAG
TCACGAGCCACCATGCTGGGGTGCAGTTTGCCCCTTTGTCCCACACTTCT
CTTTTCCGTTCAAGCTGTCTATTCTTCTTGTCATTTCTTTCCCCCCCCCC
CATGCAACCTGTGTATAATGCACTGGACCACCTATGCAGAATTAAACACT
GTCCGAGGCTGCACACGGTTGTAGTATCAGGCTTCTTCAACTATGGGTCT
TCCTTTCATCACTAGCCTTATGTGCTTCTCCACGTACTATTTTCAAAATA
TTAAGTAAAGAGGACTTACTGGCTGTTTCTCATTCTGACTTCTGAGCAAC
CTGAAGAGATGTGTTTATTTCACACATAAATAACTCACCCTGTGACCAGG
CTTGTGATGAGGACTAAGCATAAATTGATGTGCCCCTGACTTCCTGGCAC
ACTGACACTATGTGTAAGTGCAGAGACCAATCTTATAATAAGGGTGCTGG
CTGACAGAAGGAAAAAGGAGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_j23.g1 MSMg01no322_j23.g1 CHROMAT_FILE:
MSMg01no322_j23.g1 PHD_FILE: MSMg01no322_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:38 2005
         (337 letters)



>mm_chr14_104759973_104760709
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaattaaacactgtccgaggctgcacacggttgtagtatcaggcttcttcaactatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaattaaacactgtccgaggctgcacacggttgtagtatcaggcttcttcaactatggg 260

                                                                       
Query: 61  tcttcctttcatcactagccttatgtgcttctccacgtactattttcaaaatattaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcctttcatcactagccttatgtgcttctccacgtactattttcaaaatattaagta 320

                                                                       
Query: 121 aagaggacttactggctgtttctcattctgacttctgagcaacctgaagagatgtgttta 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 aagaggacttactggctgtttctcattctgatttctgagcaacctgaagagatgtgttta 380

                                                                       
Query: 181 tttcacacataaataactcaccctgtgaccaggcttgtgatgaggactaagcataaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcacacataaataactcaccctgtgaccaggcttgtgatgaggactaagcataaattg 440

                                                                       
Query: 241 atgtgcccctgacttcctggcacactgacactatgtgtaagtgcagagaccaatcttata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgcccctgacttcctggcacactgacactatgtgtaagtgcagagaccaatcttata 500

                                                
Query: 301 ataagggtgctggctgacagaaggaaaaaggagagat 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataagggtgctggctgacagaaggaaaaaggagagat 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)