BAC Information

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BAC

Clone NameMSMg01-322K06
Chromosome14 (Build37)
Map Location 17,082,146 - 17,082,431
singlet/doubletsinglet
Overlap geneOxsm, Ngly1
Upstream geneLrrc3b, LOC667205, 1700062C10Rik, LOC667209, EG435389
Downstream geneTop2b, Rarb, Tpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322K06.T7 (MSMg01no322_k06.b1)MSMg01-322K06.TJ (MSMg01no322_k06.g1)
ACCAG441281AG441282
length725723
length of high quality
(start - end)
299 (427 - 725)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no322_k06.b1 PHD_FILE: MSMg01no322_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:39 2005CHROMAT_FILE: MSMg01no322_k06.g1 PHD_FILE: MSMg01no322_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAAGAAGATCCGCGGAATTCCTA
AACCTGACAAATAAATTCAGTGCAGTACCTGGATATAAAATTAACTCAAA
CAAATCAGTGTCCTCCCTCCACACAAAGGATAAACAAACTGAGAAAGAAA
TTAGGGAAACAACACCCTTCAAAATAGTCACAAATAATATAAAATATCTT
GGTGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAA
CTCTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCC
CTGCTATGGATTGGAATGGTCAATATAGTAAAAATTACTATCTTGCTGAA
AGCTATCTTCTTCTAAACCCCACCTCCATTCTTCAACGAATTAGAAAGGG
CAATCGGCAGACTCATCTGGAATAACAAAACTCTTCTCAAGGATAAAGAA
CCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATT
GTGATAAAAAACAAAAAAACAACAACAACAACAAAAAAAAAACTGCATGG
TACTGGTACCATGACAGACAGGTAGACCAATGGAATAGAATTGAAGACCC
AGAAGTGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTA
AAACCATCCAGTGGAAAAAAGACAGCATGTTTAACAAATGGTGCTGGCAC
AGCTGGCAACTAGCATGTAAAAGAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTACAGACTTCGGGTCGGTGTGTTTGTA
AGAGCCAGCGCCCAGGGGCTCAACTGAAGTGACCTCCACTGTCTGCCCCT
CCGCATCCCTTCCCCACACTCTTTGACCTGAGCGGCCATGGGAGGTGCTG
ACTCAAACTCCCAGCCAGCTGTGGAAAGTGCTGCACTCAGTACAAAGGTG
ACTTGACACAAAGTTCGTAACTTAAACTATAAATGTGTCAACCGCCAAAC
TCGGCGTGAACGTTTAACTGGCACTCGGGCTGAGCCACAGCGCCGGGATC
CTGCAGCGAGTATGGGACAGCCCAGCTGCCAAACTCAGTGACAGCCTCGG
CGGGCCCTCGTCGCCCACCCCGCCCCGCCTCAGGCCCGAGTGTCCGCGGC
CCCGCCCGCCTGCCGCCCTCAGGCTCGAGGGCCCCGGCTGCACCTCAGGA
TGTTGTCGGCGTAGGTGAGCAGCAGCTTGGAGGCCTCCAGAAAGGTCTCC
GGTGTGTTCTGGCATAGCTCGGTCACGGCCGGGGACGCAGAGCTCGACGA
GCTGCCCAGTGTGGTCGACGCCATGTCTGCGCCGTGGCCTTCGCCATCTC
GCGTACCGCGGTCCGCACTGAACATGCGCTGAGGATTGCCTATGTCGACT
TCATACCCCTGCGACTATAGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_k06.g1 MSMg01no322_k06.g1 CHROMAT_FILE:
MSMg01no322_k06.g1 PHD_FILE: MSMg01no322_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:39 2005
         (286 letters)



>mm_chr14_17081946_17082631
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacagacttcgggtcggtgtgtttgtaagagccagcgcccaggggctcaactgaagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctacagacttcgggtcggtgtgtttgtaagagccagcgcccaggggctcaactgaagtga 427

                                                                       
Query: 61  cctccactgtctgcccctccgcatcccttccccacactctttgacctgagcggccatggg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 426 cctccactgtctgcccctccgcatcccttccccacactctttgaccggagcggccatggg 367

                                                                       
Query: 121 aggtgctgactcaaactcccagccagctgtggaaagtgctgcactcagtacaaaggtgac 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 366 aggtgctgactcaaactcccagccagttgtggaaagtgctgcactcagtacaaaggtgac 307

                                                                       
Query: 181 ttgacacaaagttcgtaacttaaactataaatgtgtcaaccgccaaactcggcgtgaacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttgacacaaagttcgtaacttaaactataaatgtgtcaaccgccaaactcggcgtgaacg 247

                                                         
Query: 241 tttaactggcactcgggctgagccacagcgccgggatcctgcagcg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttaactggcactcgggctgagccacagcgccgggatcctgcagcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)