BAC Information

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BAC

Clone NameMSMg01-323C18
Chromosome14 (Build37)
Map Location 109,537,371 - 109,537,856
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323C18.T7 (MSMg01no323_c18.b1)MSMg01-323C18.TJ (MSMg01no323_c18.g1)
ACCAG441667AG441668
length1,1371,221
length of high quality
(start - end)
357 (402 - 758)675 (140 - 814)
definitionCHROMAT_FILE: MSMg01no323_c18.b1 PHD_FILE: MSMg01no323_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:25 2005CHROMAT_FILE: MSMg01no323_c18.g1 PHD_FILE: MSMg01no323_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGGTCCNNNNNNGCCATTGGGCGCATXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTCTTTATGTCCTCCCTTTAAGCCCGAGATATGCTTTTA
AATCCAGGTCTACCTCTTTAGGTGTGCCAGGGTGTCCTGGACTGGGAGAA
GTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGTTTCTGTTAGT
AGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTG
TTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCT
CAATCAGCAGACGTGGGAGACAAGCTCTTTCCTCTGAGTTTCAGTGGTCA
GAGCAGTCTCTGCAGGCAAGCTCTCCTCTTTCGGTGAAGGTGTATTTTTT
TCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGTAGTCCCAAAACAGGAT
CTTTTGCACAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCGGTTGTCTGG
AGTCAAAGATGGCGCCACCCCAGAAGCTCTGCGACTCTTGCCCGTACCAG
GAACGGCTGGCCTCTGTATTCCATGCGGTCACCCGAGCAGCCTACCCTCC
GCGGAGTCCCGGAGCCAAGAAGGCTCCCGCCGGCGCCTGTGACACAAACC
TCTCAGGCCGGGCAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGT
CTGGATATATCCAATTTTCTGAGGAACAGCCAAACTAATTTCCAGAGTGG
TTGTACCAGCTTGCAATCCCACCATCAATAGAAGAGTGCTTTTCTTTCTT
CTATATCCTCACCAGCATCTGCTGTCTCCTGAATTTTAATCTTAACCATT
CTGACTGGNGNGAAGTGGAATCTCAGGCTTGGTTTGGATTTGCTTTTCCC
TGATGAATAAGGATGTTGAACATTTCTTTAAAATAAACTTTTGAAATGGT
TACTTTAATTATCAATTTTAAAAAGAATATTTGAAATATTAACTTGGTCA
GCTTTGTATAAGGTGAATTCTCCAAACCCTCTATATTTTTAATAAAACCC
CTTCTGCTTTTTCTCTCTTACTTTTGGGGCCCTCTTTTTACCTTTGAAAT
AAACAACAACCCTCCCTGGGGGAAATTTTCTTTTTTC
NCCCGATCCCNNNNNNNACAGAGTGAGGCTGGGGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAGCCCGTCTAAAA
AAAAATAAAAATGTGTTTTGTCCTTTAAAAATTCCCGCCCTGGGCTCAGG
ATGCTGATTCATAGATAATCAAGAGGAAATCTGGAGTAAATGACTGGATT
GACATGTAAAATAAGAGACTGGGCTTTTACGATCTATCTTCAGGAGATGA
TGTCCAGAGAAAATTTTTAGAACAGCAAAGGAGAACTGCTTGGATAACTG
TCTCAAGCAGAACACTGGGGTGGGAGGGGGGCGTGTCTGAAGATCTCCAG
AGAAAGCAGATCAGAGATAAAGCAGAACAGAGAAAAAGCAAGGAAAAAAT
GTCTTGAACAGAGCTTTTTCCACCACCTTTCAACCCATGATTTTTATTTC
CATTCATTGCCTTTGATGCTCCCAGATGCCCCTTCCTCTGAATCCATTGC
CAATCTGAGGCTGGTCCTTGGCAGTATTGCAACTCAGAAAAGCATTCACA
TATATGAATTTTATGATAGTTTCAATGAAGGCTACATACAGTGAGGCTTA
TGTCAGTGGCTGTATTTAACTTTGGGATCAATACAACAGAGTGTAACAAT
AGGGGTCATAAAGTATCAAAATCATATGAAAGCTGGTTACTTCCTAACCT
TAAGTTTCTACTCATTGGTGCCATGTGGACATGTGACTTGCACTGAATGG
TTTCACTTGAAACCATTCTTGGCATTGGGATAACACCCAATTTATATTGG
TAAATACAGTGCAACATATTTTACTTACTTACTTACTGAATGATTGAATG
AATGAATGAATGCTTAAATGGACTGAATATAAAAGGAGACAGTTTAGAAT
TTACTTTTGGATTTAAACTCTACCATAAATCCTATATAACATGGATAAAA
AGAAACTATCTTGAAAAATATTGAAATAATTTATTTTACCCGTTAATCTT
TCCTGAAGTAAAACCCTTTTTTGGAGGATCTAAACAAAAATGGGACTAAC
CCGTCTTAAAGGCCCTGGGTTTTGGGCCGGGAATCCCAAACCCTTGAAAA
AGCTCCCTCCACCTGTGTTCCTAACCCCCAAATTTGGGGACCTTCCCAAG
GAAAATTATTTTTTTGAAAGAAACCCTTCCCAAAAAAAAATTGAAATTTT
TTGGCATCTTAGGGATCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_c18.g1 MSMg01no323_c18.g1 CHROMAT_FILE:
MSMg01no323_c18.g1 PHD_FILE: MSMg01no323_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:25 2005
         (675 letters)



>mm_chr14_109536787_109537860
          Length = 1074

 Score =  828 bits (428), Expect = 0.0
 Identities = 473/488 (96%), Gaps = 3/488 (0%)
 Strand = Plus / Minus

                                                                        
Query: 189  ggggcgtgtctgaagatctccagagaaagcagatcagagataaagcagaacagagaaaaa 248
            |||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 1070 gggg-gtgtctgaagatctccacagaaagcagatcaaagataaagcagaacagagaaaaa 1012

                                                                        
Query: 249  gcaaggaaaaaatgtcttgaacagagctttttccaccacctttcaacccatgatttttat 308
            |||||||||||||||| |||||||||| |   ||||||||||||||||||||||||||||
Sbjct: 1011 gcaaggaaaaaatgtcgtgaacagagcataggccaccacctttcaacccatgatttttat 952

                                                                        
Query: 309  ttccattca-ttgcctttgatgctcccagatgccccttcctctgaatccattgccaatct 367
            ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 951  ttccattcatttgcctttgatgctcccagatgtcccttcctctgaatccattgccaatct 892

                                                                        
Query: 368  gaggctggtccttggcagtattgcaactcagaaaagcattcacatatatgaattttatga 427
            ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 891  gaggctggtccttggcagtattgcaactcagaagagcattcacatatatgtattttatga 832

                                                                        
Query: 428  tagtttcaatgaaggctacatacagtgaggcttatgtcagtggctgtatttaactttggg 487
            ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 831  tagtttcaatgaaggatacatacagtgaggcttatgtcagtggctgtatttacctttggg 772

                                                                        
Query: 488  atcaatacaacagagtgtaacaataggggtcataaagtatcaaaatcatatgaaagctgg 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  atcaatacaacagagtgtaacaataggggtcataaagtatcaaaatcatatgaaagctgg 712

                                                                        
Query: 548  ttacttcctaaccttaagtttctactcattggtgccatgtggacatgtgacttgcactga 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  ttacttcctaaccttaagtttctactcattggtgccatgtggacatgtgacttgcactga 652

                                                                        
Query: 608  atggtttcacttgaaaccattcttggcattgggataacacccaatttatattggtaaata 667
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 651  atggtttcacttgaaaccattcttggcattgggataacaccc-atttatattggtaaata 593

                    
Query: 668  cagtgcaa 675
            ||||||||
Sbjct: 592  cagtgcaa 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space:   707560
Effective search space used:   707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)