Query= MSMg01no323_f04.b1 MSMg01no323_f04.b1 CHROMAT_FILE:
MSMg01no323_f04.b1 PHD_FILE: MSMg01no323_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:44 2005
(657 letters)
>mm_chr14_34186282_34187343
Length = 1062
Score = 1125 bits (582), Expect = 0.0
Identities = 634/662 (95%), Gaps = 20/662 (3%)
Strand = Plus / Plus
Query: 1 agagagcaattaacagggtctggtggcatactgctgacatgagaacagtggaggtggacc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 agagagcaattaacagggtctggtggcatactgctgacatgagaacggtggaggtggacc 260
Query: 61 tttgacagactgtatgggtgtcagcaaaggctagaggaatggagaagctggcctgaggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgacagactgtatgggtgtcagcaaaggctagaggaatggagaagctggcctgaggac 320
Query: 121 aagcaggatgaatgcactctgctgcctctggggtcctgggaaaggagggaggcaccttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcaggatgaatgcactctgctgcctctggggtcctgggaaaggagggaggcaccttag 380
Query: 181 cattctgtgaagaggaagtacttgaccacagtaccttctcaagcccatccagagcagggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattctgtgaagaggaagtacttgaccacagtaccttctcaagcccatccagagcagggt 440
Query: 241 ctactgactagcaactgagatggctgtggtggcatctgacacccgtcttcagacaattgg 300
||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ctactgactggcagctgagatggctgtggtggcatctgacacctgtcttcagacaattgg 500
Query: 301 gaatttcattttggagtcagatttgaaagatcatagcccagccttgccaatcctcaagtt 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gaatttcattttggagtcagatttgaaagatcatagcccagtcttgccaatcctcaagtt 560
Query: 361 gtaaatcacaaccctgtcctcacccaagtggtgagttctcaaggctggccccag-----g 415
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 561 gtaaatcacaaccctgtcctcacccaaggggtgagttctcaaggctggccccagtccagg 620
Query: 416 tcagtgggggctacaaaccactacaaacccccagccaccatcccactccccatttagttt 475
|||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 621 tcagtgggggctacaaac---tgc----ccccagccaccatcccactccccatttagttt 673
Query: 476 ctggtgtctcttggtccagtgctggaaacaaggggtaggatccatgtgatgtgatgtggg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctggtgtctcttggtccagtgctggaaacaaggggtaggatccatgtgatgtgatgtggg 733
Query: 536 gcttgggaatgcctagtcttggctctgctgcattgtgagggtgagtgctgggtgttagaa 595
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 734 gcttgggaatgcctagtcttggctctgctgcactgtgagggtgagtgctg--------aa 785
Query: 596 gctctttccagcacagcctaggaaagagaagtagcatttgctgcatatcatattcttctg 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gctctttccagcacagcctaggaaagagaagtagcatttgctgcatatcatattcttctg 845
Query: 656 ag 657
||
Sbjct: 846 ag 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1062
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1052
Effective search space: 680644
Effective search space used: 680644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_f04.g1 MSMg01no323_f04.g1 CHROMAT_FILE:
MSMg01no323_f04.g1 PHD_FILE: MSMg01no323_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:44 2005
(689 letters)
>mm_chr14_34346320_34347408
Length = 1089
Score = 1278 bits (661), Expect = 0.0
Identities = 682/689 (98%)
Strand = Plus / Minus
Query: 1 tggactgaaccgctgagcctgtaagccagccccaattaaatgttgtcctttataagactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 tggactgaaccgctgagcctgtaagccagccccaattaaatgttgtcctttataagactt 937
Query: 61 gccttgatcgtggtgtctgttcactgtagtaaaaccctaagaaaaactgacaccaatatg 120
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 936 gccttgatcgtagtgtctgttcacagtagtaaaaccctaagaaaaactgacaccaatatg 877
Query: 121 tgggtgctcggatcttgggaacagccagcagcaggcctccagtgcagccaaccaccaaag 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 876 tgggtgctcggatcttgggaacagccagcagcaggcctccagcgcagccaaccaccaaag 817
Query: 181 tagtgctatctagcctgtccctgatatccttaccacactggttacatacctggacatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tagtgctatctagcctgtccctgatatccttaccacactggttacatacctggacatcag 757
Query: 241 gaagggattctggtgcaggcagctgcccatgtatcctctctgggtccccaattctgggag 300
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 756 gaagggattctggtgcaggcagctgcccatggaccctctctgggtccccaattctgggag 697
Query: 301 gcagaccaaagcaactctttccaagttgggaggagcctcattccccttgactctggcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gcagaccaaagcaactctttccaagttgggaggagcctcattccccttgactctggcctt 637
Query: 361 gcagaaaatgcaacccaatttgaccaaaacccactaggggtcagccctaaaccagcaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gcagaaaatgcaacccaatttgaccaaaacccactaggggtcagccctaaaccagcaaag 577
Query: 421 aaccaagggtgtatgagtcagagatgggccagccctttaggaatttggagggcatcagtc 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 576 aaccaagggtgtatgagtcagagatgggccagccctttgggaatttggagggcatcagtc 517
Query: 481 ttccaaaaccaagtacacagggagagacactggcagtcgaacaggctcaagaaaaggaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttccaaaaccaagtacacagggagagacactggcagtcgaacaggctcaagaaaaggaaa 457
Query: 541 aatcccagaacccaaggaggaccagagtgaggcctgggaatgcagtggtgccctttgaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aatcccagaacccaaggaggaccagagtgaggcctgggaatgcagtggtgccctttgaag 397
Query: 601 aacagcaagggcttgcttatctggcctgggtttctgtggctcctgtaatctggcccatcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aacagcaagggcttgcttatctggcctgggtttctgtggctcctgtaatctggcccatcc 337
Query: 661 aggaaaccatctctcaattgttaaaaatc 689
|||||||| ||||||||||||||||||||
Sbjct: 336 aggaaaccgtctctcaattgttaaaaatc 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
