Query= MSMg01no323_h07.b1 MSMg01no323_h07.b1 CHROMAT_FILE:
MSMg01no323_h07.b1 PHD_FILE: MSMg01no323_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:01 2005
(668 letters)
>mm_chr14_39265304_39266367
Length = 1064
Score = 638 bits (330), Expect = 0.0
Identities = 420/484 (86%), Gaps = 55/484 (11%)
Strand = Plus / Minus
Query: 235 agttcaattcccaacaaccacatgatgcctcacaaccatcagtgatgggatatggtgccc 294
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1064 agttcaattcccaacaaccacatgatggctcacaaccatcagtgatgggatatggtgccc 1005
Query: 295 tcttttgatgtgtctgaagacagatacagtatatatactgtatata-------------- 340
||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct: 1004 tcttttgatgtgtctgaagacagctacagtatatata-tatatatatatatatatatata 946
Query: 341 ----------------------------------tgtgtgtgtgtgtatagactaaatct 366
||||||||||||| ||||||||||||
Sbjct: 945 tatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagactaaatct 886
Query: 367 ttcttt--aaaaaaaaagaaaggaagacaacgatattttaaaccttgccaacagttggtc 424
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 885 ttctttaaaaaaaaaaagaaaggaagacaatgatattttaaaccttgccaacagttggtc 826
Query: 425 acataataacgtgcaaagctaaaaatctgggtcttgtcctaaagaatagagacttaatta 484
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 825 acataataacgtgcaaagc----aatctgggtcttgtcctaaagaatagagacttaatta 770
Query: 485 tgaaaaccgaggttataatcattttgataatcatatgattctaaaggaaacttatgtcca 544
||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 769 tgaaaaccgtggttataatcattttgataattatatgattctaaaggaaatttatgtcca 710
Query: 545 ggaatttgactttcttttgcctttgtcattaggggcatgaggtagttaatataaagatta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggaatttgactttcttttgcctttgtcattaggggcatgaggtagttaatataaagatta 650
Query: 605 gaaagaatagatacttgataggattttctgagaacttgcattgccatgctttgggggttg 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 649 gaaagaatagatacttgataggattttctgagaacttgcattgccatgctttggggattg 590
Query: 665 attt 668
||||
Sbjct: 589 attt 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1064
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1054
Effective search space: 693532
Effective search space used: 693532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_h07.g1 MSMg01no323_h07.g1 CHROMAT_FILE:
MSMg01no323_h07.g1 PHD_FILE: MSMg01no323_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:01 2005
(721 letters)
>mm_chr14_39105538_39106658
Length = 1121
Score = 1340 bits (693), Expect = 0.0
Identities = 714/721 (99%)
Strand = Plus / Plus
Query: 1 gtccaaggttattaaaaaatttttcaccacttgtgaaaatacccacatcaaaaagggata 60
|||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 201 gtccaaggatattaaaaaatttttcaccaggagtgaaaatacatacatcaaaaagggata 260
Query: 61 aaagaacaggtagctctttttttctagatagttgaatatattaaagtcataaatattata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaacaggtagctctttttttctagatagttgaatatattaaagtcataaatattata 320
Query: 121 cactttaaaaaaatctcaaacattaacatatttcccttgtaaatactgtactttcaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactttaaaaaaatctcaaacattaacatatttcccttgtaaatactgtactttcaaata 380
Query: 181 cccaatcctaattgtcttaagactgactactgtgaatcttttgcccttgaaaaggatgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaatcctaattgtcttaagactgactactgtgaatcttttgcccttgaaaaggatgcc 440
Query: 241 ctcctattgatagccttaatttggatttaaatgagcctattcatttttcaatgatatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctattgatagccttaatttggatttaaatgagcctattcatttttcaatgatatgat 500
Query: 301 gtttaataatgcttctttgcctatattcatgtttcaagcatattaattctgcagactttg 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttaataatgcttctttgcctagattcatgtttcaagcatattaattctgcagactttg 560
Query: 361 cttgagtattcaccacttgataaatggattacaaaagttatactcattaatcaaagactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgagtattcaccacttgataaatggattacaaaagttatactcattaatcaaagactc 620
Query: 421 atggtatgaccaaagcaagaatagtaatgactgacacattatgaagctatgagaaaatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggtatgaccaaagcaagaatagtaatgactgacacattatgaagctatgagaaaatgc 680
Query: 481 tctcagccaatctatcttcaccagaaatttgctgctctttgtaccaatgaatgggaaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctcagccaatctatcttcaccagaaatttgctgctctttgtaccaatgaatgggaaaag 740
Query: 541 agactctgaatacagctttagaagccttgtatcatcaagctacatttacatctgtatttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agactctgaatacagctttagaagccttgtatcatcaagctacatttacatctgtatttc 800
Query: 601 tgttgtatagcactttcttctgggataaaaccatctgtcttggagtgaagctctttatga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgttgtatagcactttcttctgggataaaaccatctgtcttggagtgaagctctttatga 860
Query: 661 caaaggatattcattcaaggtgaaacatttcttcctcaaggaagaatttgttaagatcag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 caaaggatattcattcaaggtgaaacatttcttcctcaaggaagaatttgttaagatcag 920
Query: 721 g 721
|
Sbjct: 921 g 921
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
