BAC Information

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BAC

Clone NameMSMg01-323J12
Chromosome14 (Build37)
Map Location 93,084,648 - 93,085,057
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377, LOC638252
Downstream genePcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323J12.T7 (MSMg01no323_j12.b1)MSMg01-323J12.TJ (MSMg01no323_j12.g1)
ACCAG441973AG441974
length1,1221,373
length of high quality
(start - end)
---408 (359 - 766)
definitionCHROMAT_FILE: MSMg01no323_j12.b1 PHD_FILE: MSMg01no323_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:19 2005CHROMAT_FILE: MSMg01no323_j12.g1 PHD_FILE: MSMg01no323_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCAATTNNNNNNAATTCAGTGCGCGCTATXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATTTCATTTGACTGGTCCCATTTATCTCCAGACT
ATGAGTGGAAATTGAGGCAATGTACTGTTAGATGATCGAACTCCTGATTA
TAGAATTCAAAAGGATTGCGCTTCTTAAGTGACTATATTGTAGCTGCTAG
TGTTTGACAGAGCACCTGTTGACATGTCTACACTTTTTCTTCTAATGTTA
CTTACTTCGTGCTAGAAACACATGCATATCTAATAACCTAGAATTGACAA
ATATTAATCAAAAAATTTTCCACTCTGATGTTCATTGTGATGTCATCTTC
TAGTTGCCCACACGTACTATGTCCCTTGATCATACATAATGTCGTAATTA
ATCTACTTGTAGTCCTTTTTCTATTTCTGATGCGACAGATATTTTAAAAA
ATGAACCTGCCTTCTCTCTGCGCTCCTGCTTCTCTCAAACCACCAAATCT
CCTGCCCTGACATAGAGTCACTCTTCTGACTACATCACACTAGTACAAGA
ATCGCTGCCGTTGCTATGTGCTATATTAAGATTGGCTACTCATGATCACT
ATGATGTACCTTCTCTGTATAGAGCGTCTCCTATACATGCNCATATGAAG
CTGAGATGTANAACAGTTCGTCATTTAATTACTCAGACTTTTATTGACAC
TATTGGATCTTTTGCTAAATTTTCTCATCTCTGGTGTACATTTGATCCCT
GTTTTCCCTTCTAGCCCAAATAGCTGGATGTTATTAAACTCACATTGTTT
TTATACAATCCAATCAACTGAGCTTCATAACTTATTAAGTTGGGGTCCCA
AAAATTCCTTTTTTATTGGGGACCTTTTACAAAAAGGCTGAAGTTTTTTT
TTTTTAAAAATTCCCCTGAAAGGGTCTTTGTGGTCCCAAAGGGGTTAAAA
CCCCTAAAAATTTTTTTCCCTCGGTTTTTCTGCCCCCGCCCCCTTTTTGG
GGGGGGCCCCCCCCTTTTAAAACCCCCCCTCTCCCCCAACAGAGATAAAA
TTTAATTTCCCCTGCCGCGGGAAGGGGATTTTCTTCTTTTTGCCCCCCCT
AAAATAGTGTTTTCTTCTTTTT
NNNNCCATTTCGTNNNNNATGATGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATGAAGCACTTTGTGAGA
ATGGGGACAGACAGGTGCCCATTTATCATTCTACACCCCGCTCAGGTTAG
CCTATGAGATCCACCTTCATTGAGAGAGTTTTTCTTAATTGATGACTCAT
AGAACGCACTTGAGGAACGAATGCATCTCTTTTGTAGGATTCCACTTGTA
GTGCTTATACATATTTAAGAGCACATGTGTTGTATATATATATATATATA
TATCTATGTATATATGTACGTGAGTTTGACAGAAAGGAAGATGAGGCATA
TACGCACTAGGAGTTGAAGAAAAGAAAGAGAAAGGAAATATATATATCAT
ATATATTCTCAAAAATATTTAATGGAAATAAGGTTCTAATCAACTGTCCT
CCATCTTCAATCTGTCATGTAGATAACAGATGTGTGTATAGCTTGTTGCA
GCTACTGTTCACTAGATCACTTATTCAGTCAACAAATATCAAGGTCTGTT
ACTTACAGTGCTAGATTCTGAAGAAAGTTAATCTTACTGATATACCTTCT
GAAAGAATCTTTTCTTATATCTTTAGAGACACTATCTGCGGAGAATATTG
GTCAAACAATTTTAAATAAGAGGAAACTGTTGTAAATTTATGAATCTTGA
ACCTAAATCATTTAATAACTTCTACTTTCATGATGTGATTATTTGTTCCT
TTGTGTGCTTGTCTTGAAACCATGGCCAATGTAGAGTCACTTTTGAATGG
AAAATTTCAAGCTATATATACTTTTTTCCTTATGCAATTAACATACATCA
CACATTTTATTAAGGAAATGTAAAACTAATATTGAAACTTGATCTTGAGT
TCTTGAAGAAAGAGAGTTAATTGTTGCTATGGAAATAACTATAAATTTTT
GACCCCCTTGAATTTGAGCACCCGGCGGGAGGAAATATTATTGACTCGAA
TTCTGTGTGGGAAACACCAATTCTGTTGCCATTTGGAACATGACTTTTAA
AATGGGGTTTTTTGGATTGAAAAACCCCCCCAAAGGGGGAGGACCCCACC
TTTTTCTGGGGGCTTTTGAAGAAAAAAGGCGCTTAACCGGTTCCTCTCTC
TTAGGGAAAATGAAGGTCAAGCTATGCCCTCAGATCTTACCGGAAGCTCT
ATAAACCCCGGGTTTCCTCGGTATAATTCTACCCCCTTAAACTTATGGCC
CTGGNGAAAAATATTCGTGGCTTGTCGGCCTNATCCAAATTTAACTCNCA
CCACATTTCTGTATACNAGGCAACTCTTTTGTCCCATCTTANTTACTNAT
ANTTNTGAACTTACGCGCACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_j12.g1 MSMg01no323_j12.g1 CHROMAT_FILE:
MSMg01no323_j12.g1 PHD_FILE: MSMg01no323_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:19 2005
         (408 letters)



>mm_chr14_93084448_93085257
          Length = 810

 Score =  743 bits (384), Expect = 0.0
 Identities = 403/410 (98%), Gaps = 2/410 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagttgaagaaaagaaagagaaaggaa--atatatatatcatatatattctcaaaaat 58
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 610 aggagttgaagaaaagaaagagaaaggaaatatatatatatcatatatattctcaaaaat 551

                                                                       
Query: 59  atttaatggaaataaggttctaatcaactgtcctccatcttcaatctgtcatgtagataa 118
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atttaatggaaataaagttctaatcaactgtcctccatcttcaatctgtcatgtagataa 491

                                                                       
Query: 119 cagatgtgtgtatagcttgttgcagctactgttcactagatcacttattcagtcaacaaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cagatgtgtgtatagcttgttgcagctactgttcactagatcacttattcagtcaacaaa 431

                                                                       
Query: 179 tatcaaggtctgttacttacagtgctagattctgaagaaagttaatcttactgatatacc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 430 tatcaaggtctgttacttacagtgctagattctgaagaaagttaatcttactgatatgcc 371

                                                                       
Query: 239 ttctgaaagaatcttttcttatatctttagagacactatctgcggagaatattggtcaaa 298
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttctgcaagaatcttttcttatatctttagagacactatctgcggagaatattggtcaaa 311

                                                                       
Query: 299 caattttaaataagaggaaactgttgtaaatttatgaatcttgaacctaaatcatttaat 358
           | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 310 cgattttaaataagaggaaactgttgtaaattcatgaatcttgaacctaaatcatttaat 251

                                                             
Query: 359 aacttctactttcatgatgtgattatttgttcctttgtgtgcttgtcttg 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aacttctactttcatgatgtgattatttgttcctttgtgtgcttgtcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 810
Length adjustment: 9
Effective length of query: 399
Effective length of database: 801
Effective search space:   319599
Effective search space used:   319599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)