BAC Information

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BAC

Clone NameMSMg01-324O01
Chromosome14 (Build37)
Map Location 22,925,039 - 23,116,422
singlet/doubletdoublet
Overlap gene1700112E06Rik
Upstream geneAdk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075
Downstream geneEG435392, LOC665068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324O01.T7 (MSMg01no324_o01.b1)MSMg01-324O01.TJ (MSMg01no324_o01.g1)
ACCAG442910AG442911
length713713
length of high quality
(start - end)		454 (44 - 497)385 (82 - 466)
definitionCHROMAT_FILE: MSMg01no324_o01.b1 PHD_FILE: MSMg01no324_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:18 2005CHROMAT_FILE: MSMg01no324_o01.g1 PHD_FILE: MSMg01no324_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,115,979 - 23,116,422)(22,925,039 - 22,925,422)
sequence
AAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCC
GCGGAATTCTTCATAGCCACCAGTCATAAATATCAACATGGCATCCTGGC
TACAGGCCATCAATTCTCATAACAGAGGCATGAATTAATGGCACCATCTG
CCCTGCCCATAGGACCCCTATATAGCCACCTCCCCTGAGGCCTTACCCTA
GGCCCAAGGGCCAACAGGAGGATTCAGTTCAGAAAAGGAAAGAACTTGAG
AGCCTGCAGGCTAACCAGAGGCATGAGGGACCTCTCTGCCCCAAGAGAAG
CTAGAAACAGGATCCTGTATAAGTAGAGGGATAAAAATCAGACGAAGTGA
CAGCACAAGGATGTCATCAAGGGCAAGCAGAGCCGTGCCTCTCCCCAGCC
ATAAATCACCATCTCAGCCCTCATCCTGGATTCCTCTCTTTCCCTCATTC
CTGCAGGCAATCCTCCAGCAAAGGCTGATGCTGCCTTCAAAATACAGCCT
GATGGCTGCGGAGAGAAGTCAGCTGATAAAGTGCTTGCTGCACAAGCCTG
AAGACCTGAATGTGGTCCCCAGAATCGTCTCTCTCCCTCTCTCTCTCTCT
CTCTCTCTCTCTCTTCTCTCGTCTCTAGCTCATTCATTCACCCGTTCACG
CACTAACTACCCTTTCTATTCTCGTTTTTTCAAACACAATATCCCCCGTA
CTGGTGATGCTTA

NTTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTGTCTCCATGGCG
TGTTACTCATTGCAACTTTCCCTAGGGAGGAGGAGTCTCTTAACAACACT
GCAGCATCACAGGAATTCAAAGACAGAAATGGTCAGAGCACCTTGGGTCA
GTTGACAGTGACAGGATGCCTGTGAGTTCTTTCCAGAGCGCAGGGACCTG
TGTTTTGCACTGCTGACCCCAGTGTTGACTCATCTCTGGTGGCTTGTAGC
TGTGAAAGGAGTCCCCCCATCCCCACCCTGGTTACTGTGTCACATTGTGT
ACTCAGGTTCTTTAGAGGCATGCCTCATAAATCAGCCTGCCTTCCTTCTC
CGAGGTGGGAACGGCTTCCCACATTCCCTCACACAGACCCTTGGTTTCAG
GTAATAACCCATTGAGACTAGAAAGTGACACAAGGCCAGGAACAACTCAG
CTCAACATTCCTGAGCACTGTTTTTGAAACAGAACCTAAGGATGGAATTG
GGGGCTGGAATCTCTGGAAGTCTCCTCTGGCATGTAACCCCCTTGTGCCC
TTATGTCTTAGCTGCCTCACCACGGTTGAACTCTGGACATTTTGCACACA
AATAGTTCAGCATTCAAGTTCCCTGGAAGACTCTATGCTTTATCACGGGC
GATGGAGCCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_o01.b1 MSMg01no324_o01.b1 CHROMAT_FILE:
MSMg01no324_o01.b1 PHD_FILE: MSMg01no324_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:18 2005
         (454 letters)



>mm_chr14_23115849_23116702
          Length = 854

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattcttcatagccaccagtcataaatatcaacatggcatcctggctacaggccatcaa 70
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattcttcatagcaaccagtcataaatatcaacatggcatcctggctacaggccatcaa 515

                                                                       
Query: 71  ttctcataacagaggcatgaattaatggcaccatctgccctgcccataggacccctatat 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttctcataacagaggcatgaattaatggcaccatctgccctgcccataggacccctatat 455

                                                                       
Query: 131 agccacctcccctgaggccttaccctaggcccaagggccaacaggaggattcagttcaga 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agccacctcccctgaggccttaccctaggcccaagggccaacaggaggattcagttcaga 395

                                                                       
Query: 191 aaaggaaagaacttgagagcctgcaggctaaccagaggcatgagggacctctctgcccca 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaaggaaagaacttgagagcctgcaggctaaccagaggcatgagggacctctctgcccca 335

                                                                       
Query: 251 agagaagctagaaacaggatcctgtataagtagagggataaaaatcagacgaagtgacag 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agagaagctagaaacaggatcctgtataagtagagggataaaaatcagacgaagtgacag 275

                                                                       
Query: 311 cacaaggatgtcatcaagggcaagcagagccgtgcctctccccagccataaatcaccatc 370
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 274 cacaaggatgtcatcaagggcaagcagagcggtgcctctccccagccataaatcaccatc 215

                                                                       
Query: 371 tcagccctcatcctggattcctctctttccctcattcctgcaggcaatcctccagcaaag 430
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tcaggtctcatcctggattcctctctttccctcattcctgcaggcaatcctccagcaaag 155

                                   
Query: 431 gctgatgctgccttcaaaatacag 454
           |||||||||| |||||||||||||
Sbjct: 154 gctgatgctgtcttcaaaatacag 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_o01.g1 MSMg01no324_o01.g1 CHROMAT_FILE:
MSMg01no324_o01.g1 PHD_FILE: MSMg01no324_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:18 2005
         (385 letters)



>mm_chr14_22924839_22925623
          Length = 785

 Score =  696 bits (360), Expect = 0.0
 Identities = 378/384 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatctgtctccatggcgtgttactcattgcaactttccctagggaggaggagtctctt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatctgtctccatggtgtgttactcattgcaactttccctagggaggaggagtctctt 260

                                                                       
Query: 61  aacaacactgcagcatcacaggaattcaaagacagaaatggtcagagcaccttgggtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aacaacactgcagcatcacaggaattcaaagacagaaatggtcagagcaccttggatcag 320

                                                                       
Query: 121 ttgacagtgacaggatgcctgtgagttctttccagagcgcagggacctgtgttttgcact 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttgacagtgacaggatgcctgtgagttcttcccagagcgcagggacctgtgttttgcact 380

                                                                       
Query: 181 gctgaccccagtgttgactcatctctggtggcttgtagctgtgaaaggagtccccccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgaccccagtgttgactcatctctggtggcttgtagctgtgaaaggagtccccccatc 440

                                                                       
Query: 241 cccaccctggttactgtgtcacattgtgtactcaggttctttagaggcatgcctcataaa 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 cccaccctggttactgtgtcacattgtgtactcaggttctttagagccatgcctcataaa 500

                                                                       
Query: 301 tcagcctgccttccttctccgaggtgggaacggcttcccacattccctcacacagaccct 360
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 501 tcagcctgccttccttctccgaggtgggaacggcttctcgcattccctcacacagaccct 560

                                   
Query: 361 tggtttcaggtaataacccattga 384
           ||||||||||||||||||||||||
Sbjct: 561 tggtttcaggtaataacccattga 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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