BAC Information

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BAC

Clone NameMSMg01-325L08
Chromosome14 (Build37)
Map Location 106,803,367 - 106,990,447
singlet/doubletdoublet
Overlap geneLOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742
Upstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476
Downstream geneLOC668748, LOC668752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325L08.T7 (MSMg01no325_l08.b1)MSMg01-325L08.TJ (MSMg01no325_l08.g1)
ACCAG443525AG443526
length724732
length of high quality
(start - end)		618 (45 - 662)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no325_l08.b1 PHD_FILE: MSMg01no325_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:16 2005CHROMAT_FILE: MSMg01no325_l08.g1 PHD_FILE: MSMg01no325_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,989,842 - 106,990,447)(106,803,367 - 106,803,709)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTAAGTCTCCATATAATTTTTAGTTGACTGGTGATTCAAAACCT
TAATTTCCTTTATCTGAAATTCTTTGCTCAGTCTTTAATTCCCTTTCTGT
GATAATATAACAAAAATAGAGTATTCCTGTGTGCTCAGATCCACTAACCA
CTTATTCTTTACACCAGTGTATGTCTTTGCCATCCTGAGTTGTTCTATGC
AGGGTAATATGGTGCCTTGACCTCTTGCTTGCTGTCCGGAGTGCTAATAG
AAAGCCACACAGGAGAACAGAAGAAGGGAGGAGGGGAAAATGTCAGGGCA
TTTTCTTCAGTTCATTTATTAATGAAGGTCACTGTTCCTTTTAAAATGGC
TGCTTCAGGGGACACTCCTTTCAGTTCCACTTAACCATTTGCCACCTCTG
TGTTTCACATCTGGGGTAGAACATTCTTGGTATTATTAAACTTAGACTAT
TACCTTCCTTTTGAATATTTTTGTCTAACACTCATGCTACTTGTCCATTG
TCTGTTAAAACGTCCACTGTTATTTAAGTGCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTTGTTNTAAATGGGGTTTCTTTTGTTTATTT
TTTTTTTATACCATCTTTTTTGTT

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTCTTTTGTTGTTGTTGCAGAA
AATCATTTTACTCTGCATAGCTCCTACATATTTATCCATTATCAATTGAT
AAACTCCAAGACTGAATCCATATCTCAGGTATTTGGGGATATATTATGAG
AGTTTTTTTAAGGATAAGTAGGACTTCTCTAGCTTTGGAAGTGAAAGGGA
AACTTTTTAAAGGAATTGGTTTAACTAAAACTGCAAAGAGTAAAACAATT
TGAGAAATTATAAATATCTGACTTTCAATAGCTTGCGATATGCAGAAAGT
CCAGAAAGCAGAGGCAGAGTAGGATGCTAAACAAAGTTTATGGACTTGGC
AGTTCTGTGCTGGTTGTTGCACCCCCAATTGGTGACACAGAGGGGCTGCT
TTCTCTTTCTGTATTTTAATATAATGTTTTATTTATACTTTGAAAATATC
ATAGATGCACATCAAGTGTTTCAATCATGCCCCTTTCTCTCTTCTGACTC
TCTCAGATCCAAGAACAAGCATGGCGTTCACTGATAGAAAGAAGGGATTA
GGACTTCATGTGAGGTCCACACTCGCTTTCAACATATTATATTGAAATCC
TTATGAAAAATAAATTTTTACTCTCAAGGGTGAAAACTAATCCTACGTTA
TGCGTTATACCAGACAATGTTTTGTATTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_l08.b1 MSMg01no325_l08.b1 CHROMAT_FILE:
MSMg01no325_l08.b1 PHD_FILE: MSMg01no325_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:16 2005
         (618 letters)



>mm_chr14_106989712_106990729
          Length = 1018

 Score = 1118 bits (578), Expect = 0.0
 Identities = 599/606 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattaagtctccatataatttttagttgactggtgattcaaaaccttaatttcc 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gaattctattaagtctagatataatttttagttgactggtgattcaaaaccttaatttcc 677

                                                                       
Query: 65  tttatctgaaattctttgctcagtctttaattccctttctgtgataatataacaaaaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tttatctgaaattctttgctcagtctttaattccctttctgtgataatataacaaaaata 617

                                                                       
Query: 125 gagtattcctgtgtgctcagatccactaaccacttattctttacaccagtgtatgtcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gagtattcctgtgtgctcagatccactaaccacttattctttacaccagtgtatgtcttt 557

                                                                       
Query: 185 gccatcctgagttgttctatgcagggtaatatggtgccttgacctcttgcttgctgtccg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gccatcctgagttgttctatgcagggtaatatggtgccttgacctcttgcttgctgtccg 497

                                                                       
Query: 245 gagtgctaatagaaagccacacaggagaacagaagaagggaggaggggaaaatgtcaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gagtgctaatagaaagccacacaggagaacagaagaagggaggaggggaaaatgtcaggg 437

                                                                       
Query: 305 cattttcttcagttcatttattaatgaaggtcactgttccttttaaaatggctgcttcag 364
           |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 436 cattttcttcagctcatttattagggaaggtcactgttccttttaaaatggctgcttcag 377

                                                                       
Query: 365 gggacactcctttcagttccacttaaccatttgccacctctgtgtttcacatctggggta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gggacactcctttcagttccacttaaccatttgccacctctgtgtttcacatctggggta 317

                                                                       
Query: 425 gaacattcttggtattattaaacttagactattaccttccttttgaatatttttgtctaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaacattcttggtattattaaacttagactattaccttccttttgaatatttttgtctaa 257

                                                                       
Query: 485 cactcatgctacttgtccattgtctgttaaaacgtccactgttatttaagtgctctctct 544
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cactcatactacttgtccattgtctgttaaaacgtccactgttatttaagtgctctctct 197

                                                                       
Query: 545 ctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgt 604
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ctctctctctctctccctctctctctctctctctctctctctctgtgtgtgtgtgtgtgt 137

                 
Query: 605 gtgtgt 610
           ||||||
Sbjct: 136 gtgtgt 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_l08.g1 MSMg01no325_l08.g1 CHROMAT_FILE:
MSMg01no325_l08.g1 PHD_FILE: MSMg01no325_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:16 2005
         (346 letters)



>mm_chr14_106803167_106803912
          Length = 746

 Score =  656 bits (339), Expect = 0.0
 Identities = 342/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattcttttgttgttgttgcagaaaatcattttactctgcatagctcctacatatttatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattcttttgttgttgttgcagaaaatcattttactctgcatagctcctacatatttatc 260

                                                                       
Query: 61  cattatcaattgataaactccaagactgaatccatatctcaggtatttggggatatatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattatcaattgataaactccaagactgaatccatatctcaggtatttggggatatatta 320

                                                                       
Query: 121 tgagagtttttttaaggataagtaggacttctctagctttggaagtgaaagggaaacttt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagttttttaaaggataagtaggacttctctagctttggaagtgaaagggaaacttt 380

                                                                       
Query: 181 ttaaaggaattggtttaactaaaactgcaaagagtaaaacaatttgagaaattataaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaaggaattggtttaactaaaactgcaaagagtaaaacaatttgagaaattataaata 440

                                                                       
Query: 241 tctgactttcaatagcttgcgatatgcagaaagtccagaaagcagaggcagagtaggatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgactttcaatagcttgcgatatgcagaaagtccagaaagcagaggcagagtaggatg 500

                                                      
Query: 301 ctaaacaaagtttatggacttggcagttctgtgctggttgttg 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaacaaagtttatggacttggcagttctgtgctggttgttg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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