BAC Information

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BAC

Clone NameMSMg01-325M20
Chromosome14 (Build37)
Map Location 80,868,846 - 80,869,488
singlet/doubletsinglet
Overlap geneLOC672828
Upstream geneWbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325M20.T7 (MSMg01no325_m20.b1)MSMg01-325M20.TJ (MSMg01no325_m20.g1)
ACCAG443594AG443595
length726729
length of high quality
(start - end)
535 (46 - 580)643 (75 - 717)
definitionCHROMAT_FILE: MSMg01no325_m20.b1 PHD_FILE: MSMg01no325_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:22 2005CHROMAT_FILE: MSMg01no325_m20.g1 PHD_FILE: MSMg01no325_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCTTGACCTCATTTCCACTCAGTAGTAAGTTGTTCAGCTTCCA
TGAGTTTTCATATATTTTGCCACTTCTATTGTTGTTGGTATCCAAATGGT
CAGATAGAATATAGGATATTATTTCAAGATTTTAAAATGATATTTGAGAC
TTGGTTTATGCCCTAATATGTGGGCAATTTTGGAGAAAGGTCTATGGGGT
GCTGAGAAGAATATATGTTTTTTAGTGTTTGGGTGGAATGTCCCATAGCT
GTTTATTAGGTCTATTTGACTTTGATATGATTTAACTCCAGCAGAATCTC
CATCTAGTTTTGGTATTGATGACCTTACTATTGCAGGAGTTGGGTATTAA
TCACCCAATATCACTATGTTTAATATAGCTTAGTATCACCTATTGCCAGC
ATGTGATATTAGCTGCAATCATGCTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTAGGAACCTTTGTATTTGGTGCCTAAACATTTATAATTATA
ATATCTTCTTGATCAATATTTTTAAATGAGTATTTGGTGTTCCTTCATAT
CTTCTGATTAGGTTTGGTTTGAAGTCTGTTTTGCCAGACATCAAAATAAC
TACATATGCTTGATTATCTTAGAATACTTTTTCCATTCTTTTACTGGCAA
ATTGTTTCTATCCTTGGTGGGGAGGG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTACAACAAACCTGTCTCTCAGCTC
TTCCAAGAAAACGTCTTTCTGAAGTTCATTTGAGCTAGAATCTGAACTTC
AGAAAAAAAAATGTAAGCCTGCTTTTCATATTAAGGATGAGAAGGCAGAA
AGGTGAGGTGTCTTGATAATGTTCACAATAAATGAATCTTACTTAATGTG
AGTATAGCCATGAGAGTTTGTGTAGAAAAGACAAAGTAATTTATTCTTTC
GAGGCTTGCAGAGATTCAATGCAGGGAAGTTAGTGATTAAAAACAATGAG
AAAGTAGGGTGTGCACAGCTGCCTTGAATTCTTAGACTGGTTACTATGTT
TGAGTCAGGAAATTGCTTGGGCATGGAGAAACTGCTTGCAGGCCAGAATA
TCAGTGCCTAGGCAATAAGAGAAGCTATTCCAAGTGGTGCCAGCGGCATT
TTCTGCATCCTATCTGCTAGCTCTCTCCTACTTCAACACCAGGATGTCTC
CTGCTTTCCCCTCCATCTTTCTTGAAATCTTGCACCTGTGCCTTTTATAT
AACATCTAACCTAGAACCCTATGGATAAGAGATTCTGAGAAAATATAATT
CCCATGTTTTCAATCTCTGCAATGCAGAATAGAGCACAGAAAATAAGTAA
GGGCAGTGCGGAACTGACACCTGGCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_m20.g1 MSMg01no325_m20.g1 CHROMAT_FILE:
MSMg01no325_m20.g1 PHD_FILE: MSMg01no325_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:22 2005
         (643 letters)



>mm_chr14_80868646_80869688
          Length = 1043

 Score = 1108 bits (573), Expect = 0.0
 Identities = 627/645 (97%), Gaps = 4/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actacaacaaacctgtctctcagctcttccaagaaaacgtctttctgaagttcatttgag 60
           ||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 843 actacaacaaaactgtctctcagctcttccaaggaaacatctttctgaagttcatttgag 784

                                                                       
Query: 61  ctagaatctgaacttcagaaaa-aaaaatgtaagcctgcttttcatattaaggatgagaa 119
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 783 ctagaatctgaacttcagaaaagcaaaatgtaagcctgcttttcatattaaggatgagaa 724

                                                                       
Query: 120 ggcagaaaggtgaggtgtcttgataatgttcacaataaatgaatcttacttaatgtgagt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 723 ggcagaaaggtgaggtgtcttgataatgttcacaataaatgaatcttacttattgtgagt 664

                                                                       
Query: 180 atagccatgagagtttgtgtagaaaagacaaagtaatttattctttcgaggcttgcagag 239
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||  |||
Sbjct: 663 atagccatgagagtttgtgcagaaaagacaaagtaatttattctttcgaggtttg-ggag 605

                                                                       
Query: 240 attcaatgcagggaagttagtgattaaaaacaatgagaaagtagggtgtgcacagctgcc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 604 attcaatgcagggaagttagtgattaaaaacaatgagaaagtagggtgtgcacagctgca 545

                                                                       
Query: 300 ttgaattcttagactggttactatgtttgagtcaggaaattgcttgggcatggagaaact 359
           ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttgaattgttagactggttactaggtttgagtcaggaaattgcttgggcatggagaaact 485

                                                                       
Query: 360 gcttgcaggccagaatatcagtgcctaggcaataa-gagaagctattccaagtggtgcca 418
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 484 gcttgcaggccagaatatcagtgcctaggcaataagga-aagctattccaagtggtgcca 426

                                                                       
Query: 419 gcggcattttctgcatcctatctgctagctctctcctacttcaacaccaggatgtctcct 478
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 425 gcggcattttctgcatcctatctgctagctctctcctacttcaacaacaggatgtctcct 366

                                                                       
Query: 479 gctttcccctccatctttcttgaaatcttgcacctgtgccttttatataacatctaacct 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gctttcccctccatctttcttgaaatcttgcacctgtgccttttatataacatctaacct 306

                                                                       
Query: 539 agaaccctatggataagagattctgagaaaatataattcccatgttttcaatctctgcaa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agaaccctatggataagagattctgagaaaatataattcccatgttttcaatctctgcaa 246

                                                        
Query: 599 tgcagaatagagcacagaaaataagtaagggcagtgcggaactga 643
           |||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 245 tgcagaatagagcacagaaaataagtaaggacagtgcagaactga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)