BAC Information

Click to search

BAC

Clone NameMSMg01-326B05
Chromosome14 (Build37)
Map Location 13,271,845 - 13,272,158
singlet/doubletsinglet
Overlap geneCadps
Upstream geneLOC667059, LOC100041996, Ptprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneEG432822, LOC100042022, LOC100042026, EG328354, Synpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326B05.T7 (MSMg01no326_b05.b1)MSMg01-326B05.TJ (MSMg01no326_b05.g1)
ACCAG443795AG443796
length739833
length of high quality
(start - end)
321 (35 - 355)266 (132 - 397)
definitionCHROMAT_FILE: MSMg01no326_b05.b1 PHD_FILE: MSMg01no326_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:42 2005CHROMAT_FILE: MSMg01no326_b05.g1 PHD_FILE: MSMg01no326_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCCTTTT
CCTAACGAGGCTCGCTAGCTGCAAGCACTTTCAGTCTATAAAGGCCCGGT
ACTTCAACTCCCAGCGCCTGAGGCTGTGTACCAAGCACACTCACTTAGAA
TGGAGACTCCTTTCTTCTCTATGAGGTTTCCTGGACTTGAACTGTATACA
ACTAACTCAGTTAAGAAAACCATAACTTACGTAGAGTAAAGGCCATAAAA
AAGGTATTTGCAGTTACAACTGACCTGAAGGTCACCATATACAATTACTA
AAAGTATTTACTGTTAAAAATGGCGGCCCACACTACATTTCCTGTCATAG
CCAAGGCAGCTGAAGGTAGGCTATTCACAAGTGCCGTGGAACTGGACAGC
ATACCCCCCCAATGGCAATGAATGCCCCGCCTCTTCTCCAGTGCTAACAC
GTTACACTATCGCTTGAATGTAATTAACACACCTTGCCACTGCCGCGCAA
AATCACTTATTACCTCTCACCCCCGCAGAACCAAACCTTGACCCTGATCC
ATTTCTCGGGTAGAGTACGATCACTCTTTACTCCCCGCTGTTTGACTCCC
ACCCGATTAACACCACGTTTCTCTCGTTATTACTCCGGCATACCCTCTCG
TCCAGTACCGTCTTTCCTTTTTCCCCCCCCCCTTCTTAGCTACTTTTTCT
ACTACACCGTACTAAAGTTTTTCCCCTGCCTCCTTCGTT
TCCTTTGTCTCTTTTACCCCCCGGGAGCCTACTCCTCCNCCCTCCCCCCC
CCCNNCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTAGCCCAGGCTGGCC
TCAAACTTGCTATGTAGCCAAGGATGACCTTGAGTTTATGATCCTCCCCC
ATACCTTCACTTCGCAAGTGCAGGTATCTCAGCAATATGCCAATACACCT
GGTTTATGGAGTACAGGGAGTCAAACTCAGAACTTCATACATATGAGATA
GGCAGTCTACCAACTTGGTTACGTCTGCAGTCTCAACAGCAGTTTTATTT
AATAGCTATGACAAGAATCCAAGTTCTTTCAAAGCTATAATGGGAAGATG
AGGCAACAGTCCCATTTCTGAAGCCTTTAGCCACATGTCACTGTGGGGTG
TGTGTGTGTGTGTGCGCTTTTTCCCCCCACCCTTTACAGCTTTCATGCCC
AATTTTTGAACTGATGTCCCCTTGTTTCATTCCCATTCTATTGTATTCTT
TCTTTGATGTACGATCCCCTGTGCACTTCATAACTACAGCTCTGCCTGTA
TTCCTCTATGTCCCCCAATTTCATCCGCCCTTTATTTTTACAAACTCTCT
TATCAAAAAACCCCATATCCCTATTTTTCCCCTTTTAACCCACTTGTACA
CTTTCCCCTATATATCCCATCCTTATTTATTCCACTTATACCCCCTACCA
ATTTTATCCCCCACTTTATTCCGCATTTATCTCTTTTTACCCATTACATC
TCTCGCTAACTCTGTACTCTCTATCCTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_b05.b1 MSMg01no326_b05.b1 CHROMAT_FILE:
MSMg01no326_b05.b1 PHD_FILE: MSMg01no326_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:42 2005
         (321 letters)



>mm_chr14_13271640_13272358
          Length = 719

 Score =  551 bits (285), Expect = e-161
 Identities = 308/317 (97%), Gaps = 4/317 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccttttcctaacgaggctcgctagctgcaagcactttcagtctataaaggcccgg 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccttttcctaaggaggctcgctagctgcaagcactttcagtctataaaggcccgg 265

                                                                       
Query: 66  tacttcaactcccagcgcctgaggctgtgtaccaagcacactcacttaga-atggagact 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 266 tacttcaactcccagcgcctgaggctgtgtaccaagcacactcacttagagatggagact 325

                                                                       
Query: 125 cctttcttctctatgaggtttcctggacttgaactgtatacaactaactcagttaagaaa 184
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctttct---ctatgaggtttcctggacttgaactgtatacaactaactcagttaagaaa 382

                                                                       
Query: 185 accataacttacgtagagtaaaggccataaaaaaggtatttgcagttacaactgacctga 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 accagaacttacgtagagtaaaggccataaaaaaggtatttgcagttacaactgacctga 442

                                                                       
Query: 245 aggtcaccatatacaattactaaaagtatttactgttaaaaatggcggcccacactacat 304
           ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct: 443 aggtcaccatatacaattactaaaagtatttactggtaaaaatcgtggcccacactacat 502

                            
Query: 305 ttcctgtcatagccaag 321
           |||||||||||||||||
Sbjct: 503 ttcctgtcatagccaag 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 719
Length adjustment: 9
Effective length of query: 312
Effective length of database: 710
Effective search space:   221520
Effective search space used:   221520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)