BAC Information

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BAC

Clone NameMSMg01-326C05
Chromosome14 (Build37)
Map Location 122,498,011 - 122,498,279
singlet/doubletsinglet
Overlap genenone
Upstream geneFarp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2
Downstream geneTm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326C05.T7 (MSMg01no326_c05.b1)MSMg01-326C05.TJ (MSMg01no326_c05.g1)
ACCAG443842AG443843
length735753
length of high quality
(start - end)
344 (52 - 395)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no326_c05.b1 PHD_FILE: MSMg01no326_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:47 2005CHROMAT_FILE: MSMg01no326_c05.g1 PHD_FILE: MSMg01no326_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTAAATGCAGAAAATGCGCGGAATTCCAGGGCTGTACAGATGGC
TCAGCAGTTAAGAGCATTGACTGCTCTTCCAGATGATCCTGGTTCAATTC
CCAGCACCCACATGGCATCTCACAACTGCCTGTAACTCCAGGATCTGACA
ACCTCACACAGACAATATGTGCAGGCAAAACCATACCAATGTGCATAAAA
TAAAAATAATTTTTTTTTAAAAAGTGGGTCTGGGGCTGGTGAGATGGCTC
AGTGGTTAAGAGCACCCGACTGCTCTTCTGGAGGTCCAAAGTTCAAATCC
CAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGACTCCCT
CTTCTGGGGTGTCTGAAGACAGCTACAGTGTACTTACATATACTCCCCCA
AAAAAAAAAAAAAAAAGTGGGTCTGGAGATATGGCTCAGTGGCTAAGAAC
ACCGAGTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCACCCACGTGG
TGGTTCACAACCATCTGTAATGTCATTTGATTGCCAGTTCTAATGTATTT
GAACAGGGTGACAAAGTACTAATATGCATAAATAAATCTTTTTTCAAAAC
CCACTAACAAACAAACAAACCAAAAAACCAAAACACAACAAAAAACAAAA
TCAAACTTAATTAAACACCACCTATTATAACCCTACTTACATTCCTTTTC
CCGCGACTCCACAATGTGCTATAGATGAAACCCTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATACACTTTGTCCTTCAAAAAATATGA
AGAAAAAGGCATTGGTATGTGCGGTACAGCAGGAGTGAATATCTGACTCG
TATCCATGCTTCCATGGATAACATTATCTTAGGTATGTGTGTGTGGGAAG
CCACATGTGCCGTTGCAGAGTGGCGCTGACTACTGCTGGCCACCACGCAT
AAGTTTGGACAAACAACCAATGTGTACATATGCAGTAAAGTTTTTTGCAA
AGACACTGCCTGGCCAGTTCTTGATAATGAGGCTTTGAGAGTATAACCAA
TCAAATGTGAGACATGCAAATGAGGTATGATAATGAGGCTCTGTGAGGTA
CAGAGAGAGAGACACCACCCAATCAGATGAGGAACATGCAAATGAGGCTT
AGTGCATAACCAATCCGGGTGTGAGACATGCCTCTCCTAGGCCCATATAA
GCAGCACCAGTTCTGGGCTTGGGGTCTCTTCGCCTCTGCAATCAAGCTCT
CCCAATATACGTGTGCAGAAGGATCCTGTTGCAGTGTTGCTCTTGTTGTT
CGAGTCTGGCGTGTGTAATATGTGTGGTACCACATGAGTGCAAATCTGAC
TCGTATCTATGCTTCCCCTGGTTAACATTTACCTTGTGTAGGACGATAAA
TGCTATCTGCTGAACTTGAAGAAGCTCGTATTGTTTCAGTGTCCCCTGCC
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_c05.g1 MSMg01no326_c05.g1 CHROMAT_FILE:
MSMg01no326_c05.g1 PHD_FILE: MSMg01no326_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:47 2005
         (294 letters)



>mm_chr14_122497811_122498504
          Length = 694

 Score =  474 bits (245), Expect = e-138
 Identities = 263/269 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacactttgtccttcaaaaaatatgaagaaaaaggcattggtatgtgcggtacagcag 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aatacactttgtccttcaaaaaatatgaagaaaaaggcatcggtatgtgcggtacagcag 260

                                                                       
Query: 61  gagtgaatatctgactcgtatccatgcttccatggataacattatcttaggtatgtgtgt 120
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gagtgaatttctgactcgtatccatgcttccatggataacattatcttgggtatgtgtgt 320

                                                                       
Query: 121 gtgggaagccacatgtgccgttgcagagtggcgctgactactgctggccaccacgcataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggaagccacatgtgccgttgcagagtggcgctgactactgctggccaccacgcataa 380

                                                                       
Query: 181 gtttggacaaacaaccaatgtgtacatatgcagtaaagttttttgcaaagacactgcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttggacaaacaaccaatgtgtacatatgcagtaaagttttttgcaaagacactgcctg 440

                                        
Query: 241 gccagttcttgataatgaggctttgagag 269
           |||||  | ||||||||||||||||||||
Sbjct: 441 gccagggcatgataatgaggctttgagag 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)