BAC Information

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BAC

Clone NameMSMg01-327G08
Chromosome14 (Build37)
Map Location 69,394,469 - 69,394,825
singlet/doubletsinglet
Overlap genenone
Upstream geneDock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
Downstream geneStc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327G08.T7 (MSMg01no327_g08.b1)MSMg01-327G08.TJ (MSMg01no327_g08.g1)
ACCAG444765AG444766
length771726
length of high quality
(start - end)
360 (45 - 404)587 (73 - 659)
definitionCHROMAT_FILE: MSMg01no327_g08.b1 PHD_FILE: MSMg01no327_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:17 2005CHROMAT_FILE: MSMg01no327_g08.g1 PHD_FILE: MSMg01no327_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCATGACTGTCCGGCTGAGAGCTACATAGGGCTATATTCAGGTGTG
AGGAGTAAAAGGCTGAGTTGGAATTTGTTGGTTGTTTATTTTACATGGGA
GGAAATAATCTGTGAGGTCCTTCTCTACTGGGTGTCATGGGTGTGTACTC
AAATATACACATGTGTGCCGGTAGCCTTTGGTGCATTGTTGGTTGTCTTT
CAATGCTCTCTATCCAATAATCTCCAGGGAGACAGCTCTGTATAATGAGA
AGGGTGGGGACACTTGTGAGAGTTCTAGAGGGAGGAGCTAGGGTATTTGT
TTTGCCTTATAGTGACTACTATCCTCATGGTGGCACTTAGCCATCTGGAT
TGTTTTGGCTACTTTCTTTTCCCCCCCACCCCCCGTGTGTGTTAATAAGC
TGGTGGTAACCTGGCTATGCCAGAGATATCAACTTATTTTCGATATTGCA
TACTACTCCTTACCTCTTGTTGAATTCCCCTTCTGTTCCCTTTTCCGCTT
GTTCCTACATGTCATGTTTTCCTGCTATTCCTCTGTTTTTTCAACCTTCT
TTCCATTTTTCGCCTCTCATTTCCTGTTTTTTCTTCTTTTATGGCCATTA
TTCATCCTTATCTTTTTCTATTTGTCCACTCTTTCACTTCCCTTTAATTG
CTTATCTTTTCCCCTCTCACACTCTTATTACATTTCTTTCACACATTCCT
CTTGTTTTTTCTTTACTTCAG
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAAAGGCTGAGA
AACACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATC
AAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAT
TCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGTTCTTCCTTAGAAAATTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGG
ACACATGCTCCACTATATTCCCACCACCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACAATCACTAAGGAACTCACACAATATGTACTCTCTGATAAGTGG
ATATTAGCTCAGAAACTTATGATACCCAAGATATAAGATACAATTTGCTA
AACGCATGAAACTCAAGAAGAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_g08.b1 MSMg01no327_g08.b1 CHROMAT_FILE:
MSMg01no327_g08.b1 PHD_FILE: MSMg01no327_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:17 2005
         (360 letters)



>mm_chr14_69394266_69395025
          Length = 760

 Score =  629 bits (325), Expect = 0.0
 Identities = 349/357 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccatgactgtccggctgagagctacatagggctatattcaggtgtgaggagta 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaattcccatgactgtgtggctgagagctacatagggctatattcaggtgtgaggagta 501

                                                                       
Query: 64  aaaggctgagttggaatttgttggttgtttattttacatgggaggaaataatctgtgagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaaggctgagttggaatttgttggttgtttattttacatgggaggaaataatctgtgagg 441

                                                                       
Query: 124 tccttctctactgggtgtcatgggtgtgtactcaaatatacacatgtgtgccggtagcct 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 tccttctctactgggtgtcatgggtgtgtactcaaatatacacatgtgtgccggaagcct 381

                                                                       
Query: 184 ttggtgcattgttggttgtctttcaatgctctctatccaataatctccagggagacagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttggtgcattgttggttgtctttcaatgctctctatccaataatctccagggagacagct 321

                                                                       
Query: 244 ctgtataatgagaagggtggggacacttgtgagagttctagagggaggagctagggtatt 303
           ||||||||||||||||||||||||| |||||||||  |||| ||||||||||||||||||
Sbjct: 320 ctgtataatgagaagggtggggacatttgtgagagggctagggggaggagctagggtatt 261

                                                                    
Query: 304 tgttttgccttatagtgactactatcctcatggtggcacttagccatctggattgtt 360
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgttttgccttaaagtgactactatcctcatggtggcacttagccatctggattgtt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)