BAC Information

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BAC

Clone NameMSMg01-330B18
Chromosome14 (Build37)
Map Location 63,997,233 - 63,997,475
singlet/doubletsinglet
Overlap geneBlk
Upstream geneGucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868
Downstream geneLOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330B18.T7 (MSMg01no330_b18.b1)MSMg01-330B18.TJ (MSMg01no330_b18.g1)
ACCAG446755AG446756
length748778
length of high quality
(start - end)
239 (127 - 365)243 (80 - 322)
definitionCHROMAT_FILE: MSMg01no330_b18.b1 PHD_FILE: MSMg01no330_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:46 2005CHROMAT_FILE: MSMg01no330_b18.g1 PHD_FILE: MSMg01no330_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACCTCTTACCGAAGAAATCGTCATGATCAAGTTGTCTTCATTTCA
AGTATGTAAGGGTAGTGTAACATCAATAAGTGAAGAACATCACATAAATG
GACTTAAGGAAAGAAATCAATGATGATATCAACAGCTGTAGAAAAGGTCT
CTGACAAGCCTGCCATCTCTTCATGATAAGAATTCTGGGGAAATTAGGAA
TAGAAGAAACATTTCAACAAATTAAAGGCGATATAGCTAACGTACTGAAA
CTCAAAGCATTTTCCCTAAAATATTAAAAAATAACCAAGGGTGACTATCT
TCTCCACTCTTACTTAGTATACCCCCCCCCCCCCTTAGCTAGAGAAACAA
AACAAGAGAAACCAGTGGGATATCAATAAAAAAGAAGCTAGTAAAATTAT
CCCTATTTACAGATTACATAATAGATCTCACCAGAAAGCTCTTAGAATTG
ATATATGCTTTCAGTAAAATAGCAGCACCAATGTCAAAGTACAAATCCCA
GTTGCCTTCCTATGCCTTCAGTGAACATGCCAAGGAAGGGATCAGGAGAG
CAATCTCACACACAACAGCTTCAGAAAAATAAATGTAACCAACGAAATGA
AAGTCTCTGTTATAGTTCGGAAACATTGGAGAACCCCAAAAGGGCCCTAG
AAAATGGAAAACTCTCCCACATGCATTGCAAATCCACATGAGGATCTN
CACGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACAGTCACAAAGCACAGA
GTGGGGCACCCCCCCCTCCAGTCTCCCTCTCTGCTTCAGAGCTCACCAAC
CTGGGCTGACATGTCAATCAGCCTTGGAAGGGACAACCTGCTACCTTCAT
CGGTCTTCAGAAAATCCAGCAAGCATCCTAGGAGAAGAAAGACAGCAACT
GCAAAGTGACTGGATGGAGCCTGGCTCTGATTGCGTGGTCTGTGTCTATG
TGAGGGGGTAGGGGTGGTGATTTTTTTACGGTTGAGGTGCCTCATGCTTC
AGGGAAACACTGTTACTCAGTTCCCCCCCCCCCCCCCTCTTAGTTAAATT
TATTGGGATATTCTGGAGTCTCCTGATAAAAAATAAAATAAAACAGAGGT
GCGGCTGGGTCCTATTGCTAGTGTTCCATTTCCTAGCTTGACGTCCCCCA
GCTGATCCTTTTTAACCCCTTTTTCCTTCCTAACACTGACTTCTTCACTC
CCTTCTTGGTTTCAATTATTTATTTATTATATCTCTATAACAATTAACCC
TGTTTGCATATTTATTATAACTACCTTTCTTCCCCCATTTACCTCTATAC
CCTTTTTATATTTTCTTTTTTGTCTTCCTGCTTCCTTATTCATTTTTACG
TATTCCTAATTAAAACGTAGGTGCTCTTCCTCCCTCTATTTGGTCTTATT
TTTCATCTTACACGTCCCCATCCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_b18.g1 MSMg01no330_b18.g1 CHROMAT_FILE:
MSMg01no330_b18.g1 PHD_FILE: MSMg01no330_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:46 2005
         (243 letters)



>mm_chr14_63997033_63997676
          Length = 644

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%), Gaps = 1/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacagtcacaaagcacagagtggggc-acccccccctccagtctccctctctgcttca 59
           ||||||||||||||||||||||||||||  ||||||||| ||| ||||| ||||||||||
Sbjct: 201 agtacagtcacaaagcacagagtggggcgcccccccccttcaggctcccgctctgcttca 260

                                                                       
Query: 60  gagctcaccaacctgggctgacatgtcaatcagccttggaagggacaacctgctaccttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctcaccaacctgggctgacatgtcaatcagccttggaagggacaacctgctaccttc 320

                                                                       
Query: 120 atcggtcttcagaaaatccagcaagcatcctaggagaagaaagacagcaactgcaaagtg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcggtcttcagaaaatccagcaagcatcctaggagaagaaagacagcaactgcaaagtg 380

                                                                       
Query: 180 actggatggagcctggctctgattgcgtggtctgtgtctatgtgagggggtaggggtggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 actggatggagcctggctctgattgcgtggtctgtgtctatgtgaggaggtaggggtggt 440

              
Query: 240 gat 242
           |||
Sbjct: 441 gat 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space:   148590
Effective search space used:   148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)