BAC Information

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BAC

Clone NameMSMg01-330L22
Chromosome14 (Build37)
Map Location 72,075,488 - 72,075,777
singlet/doubletsinglet
Overlap genenone
Upstream geneXpo7, LOC668443, Dok2, Gfra2, LOC100043132, LOC100043136
Downstream geneLOC668477, LOC668482, LOC675957, Fndc3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330L22.T7 (MSMg01no330_l22.b1)MSMg01-330L22.TJ (MSMg01no330_l22.g1)
ACCAG447219AG447220
length707738
length of high quality
(start - end)
285 (74 - 358)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no330_l22.b1 PHD_FILE: MSMg01no330_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:31 2005CHROMAT_FILE: MSMg01no330_l22.g1 PHD_FILE: MSMg01no330_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACAGAGACCGCGGAAT
CTCTGGTGTATTCTCCATAAAGTCACTTATATACACTATCATATCATCTG
CAAATAGTGATATTTTGATTTCTCCCTTTCCAATTTGTATATCCTTGATC
TCCTTTGTTGTCCAATTGCTCTGGCTTGGACTTCAAGTACAATGTTGAAT
AGGTAGGGAGAAAGTGGGAAGCCTTGTCTAGTCCCTGATTTTAGTGGGAT
AGGTTCAGTTTTCTCTCTATTTAGTTTGATGTTGGCTACTGGTTTGCTGT
ATATTGTTTTTATTATGTCTATTTATTTTTCTTGAATTCCTGATCTTTCC
AAGACNNTTATTTTGATTGGTTCCNGGACCCCGCCCAATGATTTCTCAAC
ATCTAATGAGATGATCATGTGCTTAAAATCTTAGGNAAAATTNTGTCGGA
GAGTATGTTGATGGAATTTGGTATATTAAATAATCCCTGCATCCTTGGGA
AGAAGCCTAACCTTTTCCCGGGGAGAACTTTTTTTTTTTCTCTCACCTTC
CCTTTTTTTTTTGGCCCAAATATTAATTTGGAAATATTTTTTGTCCGTTT
TAAATTTCTCCTCTTATAAAAAAAATATATCATCACAGCCCTTTTTTTCT
ATCTTTATTCCTCACCCATCCTGCCCACTTACTCATTAACCCATCCTCAT
TTACTCT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCAACACTGTCCACACTGCAGGAAG
TGTCGATGGTTGTTCCTGTCTGGAGACTACTTATGATTATGTCTTGTGTA
AATTAGAAGTATTTCCTTGGACCAAAGATTTTATTTTACTGAGAAGTTTG
AGAAGGAATTCATGGTTTAGAGATTGCACTGCATTTTCCTTAGGTCAAAT
TTGGGTAAAAAAATCCTATCCTATCCCATACATGAAACAGGATTTAAATG
GATTTAGAAGGGTAAGATAGATACCACATACAGCAGTACAGAAGTTCCAT
GTGTAATGAGGAGTCATGTCATGTGTATACCTCCCGCGAGGAAGAGGGAG
TCTGAGAAACCTGCAACATTGGTTAGGATACTGACTATGTGTGTCCTTTG
CTGGATATTTCTCCTCTGCAAAGAGTGAAAACCACCTTTTTAGCCATATT
TAGAAATGTCAAATTGACTGTATGTTATATCTCAAAGAGCCCAGGATACT
GTATTTACTTTCTTGGGAAAGAAGTGAAATGCATGGGGAGTTGTAACCTG
TGACGTTCACACTAACAGATCAACGTTGCATCTTGAACGTTGTAAGAATG
CCAGCAGAGTGCCATGGAAACAAGGTTGGTTTGTTAAGAATAAGATTCAA
TTTGCAAAACACATGANACTCAAGAAGAATGAAGACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_l22.g1 MSMg01no330_l22.g1 CHROMAT_FILE:
MSMg01no330_l22.g1 PHD_FILE: MSMg01no330_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:31 2005
         (292 letters)



>mm_chr14_72075288_72075978
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaacactgtccacactgcaggaagtgtcgatggttgttcctgtctggagactacttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaacactgtccacactgcaggaagtgtcgatggttgttcctgtctggagactacttatg 260

                                                                       
Query: 61  attatgtcttgtgtaaattagaagtatttccttggaccaaagattttattttactgagaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 attatgtcttgtgtaaattagaagtatttccttggaccaaagattttatttttctgagaa 320

                                                                       
Query: 121 gtttgagaaggaattcatggtttagagattgcactgcattttccttaggtcaaatttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgagaaggaattcatggtttagagattgcactgcattttccttaggtcaaatttggg 380

                                                                       
Query: 181 taaaaaaatcctatcctatcccatacatgaaacaggatttaaatggatttagaagggtaa 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaaa-tcctatcctatcccatacatgaaacaggatttaaatggatttagaagggtaa 439

                                                              
Query: 241 gatagataccacatacagcagtacagaagttccatgtgtaatgaggagtca 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatagataccacatacagcagtacagaagttccatgtgtaatgaggagtca 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)