Query= MSMg01no331_d02.b1 MSMg01no331_d02.b1 CHROMAT_FILE:
MSMg01no331_d02.b1 PHD_FILE: MSMg01no331_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:03 2005
(438 letters)
>mm_chr14_27162466_27163303
Length = 838
Score = 801 bits (414), Expect = 0.0
Identities = 432/438 (98%)
Strand = Plus / Minus
Query: 1 gaggattgccatgttctctggatcctctggaagagcaacagatcttcttaatggatgagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaggattgccatgttctctggatcctctggaagagcaacagatcttcttaatggatgagc 652
Query: 61 catccccagcccctgctcttggcttttgcccttccatgtctgcttccttgtatactttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 catccccagcccctgctcttggcttttgcccttccatgtctgcttccttgtatactttat 592
Query: 121 tagttggactggttaactccaaaacaaagaaaggtgtttgtggagacccgaagggactgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tagttggactggttaactccaaaacaaagaaaggtgtttgtggagacccgaagggactgg 532
Query: 181 tacatgaggtaggcatgggagattgccttgggctgccaggcatcaatgcagggcctcagc 240
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 531 tacatgaggtaggcatggaagattgctttgggctgccaggcatcaatgcagggcctcagc 472
Query: 241 atctctcattgtcagggttggagaagttctgtactctttcatctaggatgacaatgcaga 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 471 atctctcattgtcagggttggagaagttctgtcctctttcatctaggatgacaatgcaga 412
Query: 301 ttaggcccagcatctgaaaagtagagttgagaaactctcctgacggtgtaggtgtgggag 360
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 411 ttaggcccagcatctgaaaagtagagttgagaaactctcctgagggtggaggtgtgggag 352
Query: 361 ggaattcacgttggtgcaccagctaagcagtgttaagaggaagctgcagactaactagtc 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ggaattcatgttggtgcaccagctaagcagtgttaagaggaagctgcagactaactagtc 292
Query: 421 tgagtggatgcagcctgc 438
||||||||||||||||||
Sbjct: 291 tgagtggatgcagcctgc 274
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_d02.g1 MSMg01no331_d02.g1 CHROMAT_FILE:
MSMg01no331_d02.g1 PHD_FILE: MSMg01no331_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:04 2005
(511 letters)
>mm_chr14_26996920_26997830
Length = 911
Score = 872 bits (451), Expect = 0.0
Identities = 489/511 (95%), Gaps = 16/511 (3%)
Strand = Plus / Plus
Query: 1 agtgctgatggagtgagcacacacacacacacacacacacacacacacacatacacacac 60
||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 217 agtgctgatggagtgag----------cacacacacacacacacacacacat------ac 260
Query: 61 acacacacacacacacactcactcctgtcttccctagccagcagttggtgcctgcttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacacacacacacacactcactcctgtcttccctagccagcagttggtgcctgcttcct 320
Query: 121 gagtgatttttagtttattttagacttgaaaagttacagagagtaggctgtgtgactgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtgatttttagtttattttagacttgaaaagttacagagagtaggctgtgtgactgag 380
Query: 181 ctcctgcaaaggagggcatcttgaactccaggttcatcttgaacatcagatagggcttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcctgcaaaggagggcatcttgaactccaggttcatcttgaacatcagatagggcttgg 440
Query: 241 tttgcattctgaaagaataggttggggagtttggagggggcaatgctagacaccaggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgcattctgaaagaataggttggggagtttggagggggcaatgctagacaccaggaag 500
Query: 301 actgcacatccctaaagaacttagctgatgaggattcatggcccacgaaaatatggttaa 360
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 501 actgcacatccctaaagaacttagctgatgaggattcatggggcaggaaaatatggttag 560
Query: 361 gaatatacaaaagctgtgccaaatgtcgtgtcagccacttttatcgtttctgtagcctga 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatatacaaaaactgtgccaaatgtcgtgtcagccacttttatcgtttctgtagcctga 620
Query: 421 cacctgactttatagggtcaaaaaataatctaccttgatatcgtttcctgcatccccagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacctgactttatagggtcaaaaaataatctaccttgatatcgtttcctgcatccccagt 680
Query: 481 actcttactttgaaatgagggccactttttc 511
|||||||||||||||||| ||||||||||||
Sbjct: 681 actcttactttgaaatgaaggccactttttc 711
Score = 80.0 bits (41), Expect = 4e-19
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 23 acacacacacacacacacacacacacacatacacacacacacaca 67
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 865 acacacacacacacacacacacacacacacacacacacacacaca 821
Score = 80.0 bits (41), Expect = 4e-19
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 21 acacacacacacacacacacacacacacacatacacacacacaca 65
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 865 acacacacacacacacacacacacacacacacacacacacacaca 821
Score = 80.0 bits (41), Expect = 4e-19
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 19 acacacacacacacacacacacacacacacacatacacacacaca 63
||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 865 acacacacacacacacacacacacacacacacacacacacacaca 821
Score = 78.1 bits (40), Expect = 1e-18
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 18 cacacacacacacacacacacacacacacacacatacacacaca 61
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 864 cacacacacacacacacacacacacacacacacacacacacaca 821
Score = 70.3 bits (36), Expect = 3e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 18 cacacacacacacacacacacacacacacacacata 53
||||||||||||||||||||||||||||||||||||
Sbjct: 854 cacacacacacacacacacacacacacacacacata 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 9
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
