BAC Information

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BAC

Clone NameMSMg01-331H24
Chromosome14 (Build37)
Map Location 50,180,259 - 50,180,907
singlet/doubletsinglet
Overlap genenone
Upstream gene4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331H24.T7 (MSMg01no331_h24.b1)MSMg01-331H24.TJ (MSMg01no331_h24.g1)
ACCAG447781AG447782
length728713
length of high quality
(start - end)
649 (76 - 724)59 (242 - 300)
definitionCHROMAT_FILE: MSMg01no331_h24.b1 PHD_FILE: MSMg01no331_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:24 2005CHROMAT_FILE: MSMg01no331_h24.g1 PHD_FILE: MSMg01no331_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGCGC
GGAATTCTTGTACTTTTCATTGAGAGATAGCCATTGTTGAAATAGTCGGA
CCACAACTGTAAGACATTTTTAATAAATAATCCATGCCATCCACCTTGTT
TCTCTAGAGAACCCTGACTAATACACTCGGGGAGGATCTTTATCACCTCT
CTACGATGCAGTAGCAGGACACACTCAGTTTCCTGTACAGTGCCAGATTC
AGCAACATCAGGCCACTAAGGAAGCATAAGCCATGCTGGCTGACTCTAAC
TAGAGTGAGCAGCACAAAACTTGAAATGCACCTTGCAGTATAGCTCCAAG
CCATGTAACTCAGATGATCAGGGTCAGCACAGCAGGAAAAGCTGTCACTC
AGCAGTCTCTGCCAGGTGACCCATGTTCAGCAAAAAACACTGGTCAGGCC
AGGATGCTCAGGGGCAGAAAGCTCAGTTCAGGACAGGACCTACTAACATT
GACACTTGCAGAATGCCATTGTGTTTCTGAAGTGTGTGTGTGTGTGGGCG
GGTAGCTTCTGGCTAGAGTCAGTGCCCCTTAAGCTGCACTGATATGTGCA
TATCAGTAGGAAAAATACCAAGGTATTATCATAGATTTCATCTACATCAT
ATACAATTATCTTAGACAAATTGTGCCCTAATTTTTGAAATGTCCCTTGT
TAAGATGACTACTATTTTATAAGAAATN
CCCCATGCAGTGGTAGGCCGGGGGGGNCGGGCTTTCCGACCCGAGGAANA
NAGAAGGTTACGGAACGGAGGANCCNANNNNNNCNNGAAAGGNNCNNNAC
ACNNNGATTCACCGCGACAAAAANAANGGANCGGCNGNCNNCAANNCNNN
CAGGAAGGGAANNAANNCCGGGNANGNNNNGNGGNAGGNAGAANAAGGGC
NNCCCCAAAAAGNNAAGGCANAACCCCCAAAGACNNNAGATTTTTTTCCC
TTATGTGGAAAAGGGAAGTATCCTGAAATGGGAGTTGGGACAATGGNCTG
GATAATTTTTTTTTTATAGNCANANAGGNAGCANGNNGGAGGCANAANNC
AGAAGACCCACCCCCNNNNAGNANGAAAAGAAAAGNCCAAAGNNGGANCC
CAGCCGGGAACAAACGGGGCAAGACGGCGCACGCCNACAANCCCAGAACN
CNGGAGGCAAAGGCCGAAGGACCAGAAGNACAAGGNCANCCAAGGNCACA
NAGGGAGCNGGAAGCCAACCCGGAACACACAACANCCGGNCNAAGCAACA
ACAGAAAAGGAAAACNCNCAACCCNAAACCAACCAACAAGCAGAGAAAAG
AAACCCAACGCCAGAGNCAGAAAAGGAACNANGACGCCGGAGGTTAATGT
TANAGCAGGGCGACCCAGAGCGAAGGAACTCCAGAAACCCCTAGAAGATG
GAGAAGGCTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_h24.b1 MSMg01no331_h24.b1 CHROMAT_FILE:
MSMg01no331_h24.b1 PHD_FILE: MSMg01no331_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:24 2005
         (649 letters)



>mm_chr14_50180059_50181107
          Length = 1049

 Score = 1239 bits (641), Expect = 0.0
 Identities = 647/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatagccattgttgaaatagtcggaccacaactgtaagacatttttaataaataatccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatagccattgttgaaatagtcggaccacaactgtaagacatttttaataaataatccat 260

                                                                       
Query: 61  gccatccaccttgtttctctagagaaccctgactaatacactcggggaggatctttatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatccaccttgtttctctagagaaccctgactaatacactcggggaggatctttatca 320

                                                                       
Query: 121 cctctctacgatgcagtagcaggacacactcagtttcctgtacagtgccagattcagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctctacgatgcagtagcaggacacactcagtttcctgtacagtgccagattcagcaa 380

                                                                       
Query: 181 catcaggccactaaggaagcataagccatgctggctgactctaactagagtgagcagcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcaggccactaaggaagcataagccatgctggctgactctaactagagtgagcagcac 440

                                                                       
Query: 241 aaaacttgaaatgcaccttgcagtatagctccaagccatgtaactcagatgatcagggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacttgaaatgcaccttgcagtatagctccaagccatgtaactcagatgatcagggtc 500

                                                                       
Query: 301 agcacagcaggaaaagctgtcactcagcagtctctgccaggtgacccatgttcagcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 501 agcacagcaggaaaagctgtcactcagcagtctctgccaggtgattcatgttcagcaaaa 560

                                                                       
Query: 361 aacactggtcaggccaggatgctcaggggcagaaagctcagttcaggacaggacctacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacactggtcaggccaggatgctcaggggcagaaagctcagttcaggacaggacctacta 620

                                                                       
Query: 421 acattgacacttgcagaatgccattgtgtttctgaagtgtgtgtgtgtgtgggcgggtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattgacacttgcagaatgccattgtgtttctgaagtgtgtgtgtgtgtgggcgggtag 680

                                                                       
Query: 481 cttctggctagagtcagtgccccttaagctgcactgatatgtgcatatcagtaggaaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttctggctagagtcagtgccccttaagctgcactgatatgtgcatatcagtaggaaaaa 740

                                                                       
Query: 541 taccaaggtattatcatagatttcatctacatcatatacaattatcttagacaaattgtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taccaaggtattatcatagatttcatctacatcatatacaattatcttagacaaattgtg 800

                                                            
Query: 601 ccctaatttttgaaatgtcccttgttaagatgactactattttataaga 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccctaatttttgaaatgtcccttgttaagatgactactattttataaga 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)