BAC Information

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BAC

Clone NameMSMg01-331I17
Chromosome14 (Build37)
Map Location 75,652,955 - 75,812,997
singlet/doubletdoublet
Overlap geneCpb2, Zc3h13
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1
Downstream geneGm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331I17.T7 (MSMg01no331_i17.b1)MSMg01-331I17.TJ (MSMg01no331_i17.g1)
ACCAG447814AG447815
length731739
length of high quality
(start - end)
370 (37 - 406)623 (66 - 688)
definitionCHROMAT_FILE: MSMg01no331_i17.b1 PHD_FILE: MSMg01no331_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:27 2005CHROMAT_FILE: MSMg01no331_i17.g1 PHD_FILE: MSMg01no331_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,652,955 - 75,653,320)(75,812,585 - 75,812,997)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAGACCGCGGAATTCCTTT
GCTATCCTCCCTACCAATCATTTCCAATGACTTAAAAGATGGGATAGGAA
AGACAAGTACATTGGGGGACTGAAGAGGTAGCTTAAGGGCACCTCTGGAT
TTGATTCCTAGCACCCATGTGGCAGCTCACAACTGTCTATAACTCTAGTT
CTTGGGATCTGACACCCTCTTCTGGCCTCCATGGTCACCGCACACACATG
TAGGCAAAACACCCTACATAATGCATAAAATAATTTAAAACAGAAAGATG
AAAGATATAGATGTGACTACTATTGTATTTCAAAGCTTGGTAAGACCTCT
TACCTATCAATCTGTAAGAAAATGATGGATAAAACTATATCTTAAAAAGA
AGCCAGGCCCACCCGCTCAGTAACAAAGCACTTCCCTGGTAGGCACAAGT
GCCTGAATTCAAACCCAACACTGGAAATAACAAATGAACATTAAAGGGGG
AGGGCAGGGAGACAAATTTGAGACTGGTAGAACACTTTTGTAGTATGAGT
CGCTGATTCAGATTACCGCCCCCCCAATATCATATGCGATATGGTTCATT
ATCTTTCACCCTTGAAGGAATGATTACGATAAAACATTACCCAATTTACT
GCGATCTTTCCTACCTTTCTTCTCATACTGCCATGCTCCTTAGTTAGGAC
CTCATCGTGCGCCCCGTTGCCCCTTTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXATCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAG
CTTTCAAGCCTCGTGGCCGACATCCCTTATCTCCTGTGTGGGATGCATGT
CGGTGCGGAGCTCCGTAATTAAACATCCTCATGTAATTACATCAAGAGAT
GGTCCTTCGTGATTTTTTTTTTGGGTGCACGCTGAATCGGAAACTGGGTG
GGGATTTCCCCACTAGATCTTTCAGCATCTGTCCTGATGGCTCTTGGAAT
TGTGTGCAGATATGTTCTCCTTCGTCTCTATTTTCACATGGCCTCTTTAC
TGTTCGTATCTGTCTTCCCCACTTCTCAGAAGGACATCAGTCATGTTGGA
CTAAGGGCTACCCACATACAGGATAAGCTCATCTTAACTTGGTTACAGTG
TAAAAAATCCCACTTCCACATTAGGGTGGGCAGGGCAGGGAGGTTGAGTG
TGGACTCTAATGTGCCTTTTAGGGAACACAACTGAAACTCTAAAGCAGTT
TCTGTCCTATTGGGAAATTGGGCAAGAATAGGATTTCGAAAATTAGAAAA
GGATTTCGTTTTGTAGAGAAAACATGCTGCAAGGAAAGACAGACACAGCA
ATCGACTCTTCAGAGATGCAAAGATGTTTTTCTCTAATAGCAGCAGGGAT
GTCACTTGACCTCATCTTGTGTGACATTTGTGTGGCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_i17.b1 MSMg01no331_i17.b1 CHROMAT_FILE:
MSMg01no331_i17.b1 PHD_FILE: MSMg01no331_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:27 2005
         (370 letters)



>mm_chr14_75652751_75653520
          Length = 770

 Score =  685 bits (354), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttgctatcctccctaccaatcatttccaatgacttaaaagatgggataggaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttgctatactccctaccaatcatttccaatgacttaaaagatgggataggaa 264

                                                                       
Query: 65  agacaagtacattgggggactgaagaggtagcttaagggcacctctggatttgattccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 agacaagtacattgggggactgaagaggtagcttaagggcacctctggatttgattctta 324

                                                                       
Query: 125 gcacccatgtggcagctcacaactgtctataactctagttcttgggatctgacaccctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcacccatgtggcagctcacaactgtctataactctagttcttgggatctgacaccctct 384

                                                                       
Query: 185 tctggcctccatggtcaccgcacacacatgtaggcaaaacaccctacataatgcataaaa 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctggcctccatggtcacctcacacacatgtaggcaaaacaccctacataatgcataaaa 444

                                                                       
Query: 245 taatttaaaacagaaagatgaaagatatagatgtgactactattgtatttcaaagcttgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taatttaaaacagaaagatgaaagatatagatgtgactactattgtatttcaaagcttgg 504

                                                                       
Query: 305 taagacctcttacctatcaatctgtaagaaaatgatggataaaactatatcttaaaaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taagacctcttacctatcaatctgtaagaaaatgatggataaaactatatcttaaaaaga 564

                 
Query: 365 agccag 370
           ||||||
Sbjct: 565 agccag 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no331_i17.g1 MSMg01no331_i17.g1 CHROMAT_FILE:
MSMg01no331_i17.g1 PHD_FILE: MSMg01no331_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:27 2005
         (623 letters)



>mm_chr14_75811975_75812997
          Length = 1023

 Score =  775 bits (401), Expect = 0.0
 Identities = 410/413 (99%)
 Strand = Plus / Minus

                                                                        
Query: 211  catctgtcctgatggctcttggaattgtgtgcagatatgttctccttcgtctctattttc 270
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1023 catctgtcctgatggctcttggaattgtgtgcagatgtgttctccttcgtctctattttc 964

                                                                        
Query: 271  acatggcctctttactgttcgtatctgtcttccccacttctcagaaggacatcagtcatg 330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  acatggcctctttactgttcgtatctgtcttccccacttctcagaaggacatcagtcatg 904

                                                                        
Query: 331  ttggactaagggctacccacatacaggataagctcatcttaacttggttacagtgtaaaa 390
            ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  ttggactaagggctacccggatacaggataagctcatcttaacttggttacagtgtaaaa 844

                                                                        
Query: 391  aatcccacttccacattagggtgggcagggcagggaggttgagtgtggactctaatgtgc 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  aatcccacttccacattagggtgggcagggcagggaggttgagtgtggactctaatgtgc 784

                                                                        
Query: 451  cttttagggaacacaactgaaactctaaagcagtttctgtcctattgggaaattgggcaa 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  cttttagggaacacaactgaaactctaaagcagtttctgtcctattgggaaattgggcaa 724

                                                                        
Query: 511  gaataggatttcgaaaattagaaaaggatttcgttttgtagagaaaacatgctgcaagga 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  gaataggatttcgaaaattagaaaaggatttcgttttgtagagaaaacatgctgcaagga 664

                                                                 
Query: 571  aagacagacacagcaatcgactcttcagagatgcaaagatgtttttctctaat 623
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  aagacagacacagcaatcgactcttcagagatgcaaagatgtttttctctaat 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)