BAC Information

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BAC

Clone NameMSMg01-331M09
Chromosome14 (Build37)
Map Location 114,478,316 - 114,478,562
singlet/doubletsinglet
Overlap genenone
Upstream geneTpm3-rs7, LOC100043510, LOC382947
Downstream geneLOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331M09.T7 (MSMg01no331_m09.b1)MSMg01-331M09.TJ (MSMg01no331_m09.g1)
ACCAG447984AG447985
length850707
length of high quality
(start - end)
60 (173 - 232)246 (67 - 312)
definitionCHROMAT_FILE: MSMg01no331_m09.b1 PHD_FILE: MSMg01no331_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:43 2005CHROMAT_FILE: MSMg01no331_m09.g1 PHD_FILE: MSMg01no331_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTACTTCTCTTCCTTTCGCNCACCCTTCCCCGGCTCTATTATTATCT
AACNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAGG
ATCCGCGGTAATTCTATGTTTTCCCCCATTAGACCAATTTTTTAATGACG
GTTATCTGTATTTTCTCGGAGTCCACCTACTTCAGTCTCTTTATATATAT
TAGATTAATCCCCTATCTGATTTAGGATAGGCAAAGATCCTTTCCCAGAC
TGTTGTTGGCCTTTTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAACC
TTTGCTACTTTATGAGGTCCCATTTGTCTATTCTCCTTCTTATTGCTCCT
GCCATTGTTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTTGAT
GTCTTTCCCCATTCTCTCCTCTATATGCCTCAGCGCCTCTGGTCTTATGT
GGAGTTCCTTGACCCACTTACATTCTGACCCCCCCATTTTGATCACGACT
GGATTCACTCCCTTTCTCTCTACACGATTTCCATCAGTTGCGCCTGTTCC
ATTTGTCTGTTTTCGCTGTCTCCCTTTCTTTGGTTTGTTTTAGCCTCCCC
GTCACAGATCCTGTGATCTTTCCGTGTTTGGCCTTTTTCCTCTGCGCCCT
TATACTTTATTTCCATATGCCCTTATCTTTTCTGTTGTCTATCCCCTTTA
CCCTCGCTCCTTTTCCCTCTTACTATTCGCTCCGCCAATTATTCGTTCCT
TCGTTCCAACACCGATTGCTTCCTTTTTCCCTACCTTTTCCCTTTTTCCT
GTTGATCGGATGCTTCCTTTATCCTTCTTCTTCTACCTCTTTTTAATCTT

CATGAAGTGNTAGCCTGGAGGCGCCTGGCTTCGGATTGAGGTGAACTATA
GAAGGTTACAAGATAAAAATTTTCATTTCCTAACTTTCATGGGTTATATA
TTGCTTTGTTCTCCTTACCGCATGTTCACACAAATACTAGAAAAATTATA
TTTTGGAGAAAGAACAAAATTGGGTTTACTGTAATAAATGTGTTCCCGTA
CAACATGTATAAGTCCAAAAATTTTAAATAAGGTTTTCCTTCTTGTTTCA
GCAACTGAAAACATAGTTAAGACATCTCTCCCAACTCTGATAGAGCTGTA
CATCTCACTATAGGTAGTATTCAGTTGTCTTTAAAGGAACAAAACAGATA
GTACAAACACACACACACACACACACACTAAAAGGGATTTATTAGACCAG
CTCATAGGATATAGCCCAGGTTCTCCAACTATGACTATTTTGCACTGGCG
AGTATAAAGTAGTTGCTAAGGGTCAGAGTGTGGATGTGTCTACAGTACCA
ACCTGGCACCCAAGGCCTGGGGCATTTCTGAAAGGCTGATGATCTTCATT
CTGAGATAAAATACTGAAAAATAAATTGCATATAAGAGAAGGAATGTCCC
AGAAGCGACATAGATGAACGTGCCACCAAGGCCAACACACATATTTAGAG
CAGGTCTTCCTAATTAAAATATTAGCAATCATAACAAAGGCCTTCACTGG
AATGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_m09.g1 MSMg01no331_m09.g1 CHROMAT_FILE:
MSMg01no331_m09.g1 PHD_FILE: MSMg01no331_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:44 2005
         (246 letters)



>mm_chr14_114478116_114478762
          Length = 647

 Score =  410 bits (212), Expect = e-119
 Identities = 239/248 (96%), Gaps = 3/248 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattttc-atttcctaactttc-atgggttatatattgctttgttctccttaccgcatg 58
           |||||||| |||||||||||||| ||||||||||||||||||||||||  ||||||||| 
Sbjct: 201 aaattttcaatttcctaactttcaatgggttatatattgctttgttct-tttaccgcata 259

                                                                       
Query: 59  ttcacacaaatactagaaaaattatattttggagaaagaacaaaattgggtttactgtaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttcacacaaatactagaaaaattatattttggagaaagaacaaaattgggtttactgtaa 319

                                                                       
Query: 119 taaatgtgttcccgtacaacatgtataagtccaaaaattttaaataaggttttccttctt 178
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taaatgtgttcctgtacaacatgtataagtccaaaaattttaaataaggttttccttctt 379

                                                                       
Query: 179 gtttcagcaactgaaaacatagttaagacatctctcccaactctgatagagctgtacatc 238
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggggcagcaactgaaaacatagttaagacatctctcccaactctgatagagctgtacatc 439

                   
Query: 239 tcactata 246
           ||||||||
Sbjct: 440 tcactata 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space:   151206
Effective search space used:   151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)