BAC Information

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BAC

Clone NameMSMg01-332B05
Chromosome14 (Build37)
Map Location 80,314,613 - 80,315,283
singlet/doubletsinglet
Overlap geneEG629734
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneOlfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332B05.T7 (MSMg01no332_b05.b1)MSMg01-332B05.TJ (MSMg01no332_b05.g1)
ACCAG448204AG448205
length1,2551,278
length of high quality
(start - end)
34 (43 - 76)672 (145 - 816)
definitionCHROMAT_FILE: MSMg01no332_b05.b1 PHD_FILE: MSMg01no332_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:09 2005CHROMAT_FILE: MSMg01no332_b05.g1 PHD_FILE: MSMg01no332_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGGCCAACCCTTNNNNNACAGTGGGCCTAAGACTCCTATGGGAGAGGA
TCCGCGGAATTCATCAGGAATTAAACCCCCTACATCCTATCTCCCAGGGN
AAANNGNNNAAGGAAGANNAAGCCTAAAAAATCCCTAANAATGNTTNGGG
GTGGTAAAAANAATNAAAGATTNTATTTTTAGTNANTTNNNTGGTTGTAA
GTGGGGAGTAGAGNNATNNATAANAAGTNAGATNAGAANAGNATTGGGNT
GAGNNANANANNTGGAGATGTTGTNGAGTNNAGTTNTATNATTGGTNTAA
TAAAAAGATNTNAGTGTAGNAAAGTNAAGATGTAGNTATGATAGTAATNA
TGATGGGATTATNNAAGAAAGATGTTNANAGGATTTAGAGAGAGAGAGAG
AGAGAGAGAGAGAGTTTTTGAGAGAGAGAGAGAGAGAGAANNAAAGNAAA
AGTNATTGGAATAATTATTTNNANAGTTAGNANAATTAAATATTGAGANN
NNTGATANAAAGAAAATGAAAGGAANATTGAGTGTTAAAAATAAAGNNNA
TTAGAAAAANAGNAGNAAAAATTTGTGTNTTNTAGAANANAGATGGAAGT
TGTTTNAGAGTATTGATTGAAAAGAATNNAAANANATTGANTTATGTGTA
ATTAANAAAAATGTTTAATTAATNTGATGATGGAAAATGTNATNAATNTT
ATTTGAGTTAGTTTTAATTTAAAGATGATANNATNATGGGTATTTTGGTN
AAGTAATTTTATTTAATTAATNAAAAAGNATGTTTTNAAATATGTTTTTA
GTTTTGGTAAATTAAAAAATGGGTGAAAAAATTTTTTTTTAGGAGAAAAA
TTAAAGATATTATTTGGAAAAANTTTTTTTGATATTAATGGTTGAGGGGG
TNAAAANAAAAATTAAAAAAGTTTTAAAGAAAAATATTTTTTTTTTTTTT
TTAGGGGATAAAAAAAAAAGTTTTTTGGGAGAGTGGTGGGGAATGGAAAA
ATTTTTTTTTTTTGAAAAAAAGTGGGTTTTTTGGTTTGAGGAAATGATTG
TTTTTTTTAATTGGGGAAAAAAAAAAAATATGGTATATTTAAGGAAGGTN
TTAAGTGAATTTAAAAAAAAGGTTGGATTTGTTTTTTTTTTTTGTGNAAG
GAAGAGAAAAATTGTGGAAAGGATTTAAGATTAAGTTAGTGAAGGGGTAA
AAATTTTGGGGGGGGGGGGGGGATTTTGGGAGTTTTTATTTAAAATGGAA
AGGAA
CCGGGCCTTTTTNNAAACGACGTGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTAAAGACCCCCATTAGGG
NAAAGNTCCCAAGAGTANAGCTTTAAAATGCCCCCCCGGAAGGNTGAGAC
ATAGAGTACAGAACTCAAGGTTGAAAGCAATCTAAGAGGTGCCCGCCCGG
GCAGGGAGAGTTGCAGGAAAATGAATGACTAAGAAATTCATGATCCAAGA
TGCCTGGGTTGCAGGAGCGATTGAGGACACTTAGCAAATTGAAGACATTT
CTCTTTTATTCACCCCTTGGCTTCATTTATTTTTCCCAGCAATTGTTTTC
CCAGGACTGCAATGAAATGAACCTCACTCATGATTTGTCTAGTCATAATT
AGAGTCTTCCTTTTTCTCGTTAGACAGTAATGTCAATAATGACTGCAAAC
ATGTTCTCTCCTTTTAAAAAGGCAGAAGGCCAGCATCATTGTATCTGTGA
GTTGATGTCAGATTTGTAATGCAGAGATGCAAGCTTCACACGCCATATGC
GTGCCAAATTTCCATCAAGACTTTGGAAGGCTTAAACTGTGCATTAAGAA
GGGATCCTGTTTTGTTTCTGATGAGTTTTTTTTTCGTCCTATTAAATAAA
GAGGACAGAAAGGCCAGACCTCTTTGCCTATCAAGACTCATTTCAGGGCA
GGCAAGTAGAAGGAAGACATTCAGAGAAGAGGAGGGATATTAATGGATGT
TGAGAGGAAGATCCGGGGGCAGGGTAGAGCCTGGATAGGATTATGAGAGA
GGGAAGTGGACGTGAATGGAAAAAGGGTGGAGATCAAGGTGCAGGGCAAG
GTGATCTCTGGGTGTCTTTGTGTAAGCATGTGCGAATATGCGTATGTATG
TGCTTTTGCCCATGGGCATGTGCGTGCGCATGTACCGGCGCATGTGCCCA
AGGGTGTGGTGGAGGGGCTAAGGGAGCGGGCGGGCCCCTGGGTACGCGCC
CGCAAATGGGCATGGGGGCCAGCGGGGGCGCAGGGGCCAAACGAATTCAC
CCACTTTGCCTGGGCTGTAGTGCGCCAGCACTCACTTGCTACAACAGGGC
CCACCCCGCGGCGCACGGTGGAATGCCTCTCGCACCCCAAGTCATCCATG
AGTTCCACTGGCTCCCTCCATTGCTTCCCCCCACTCGTGAACCTCCGTTC
TAATTATTTGTCTCTCCCAATATTACCATCCCTCCTTTGACCTCATCTTG
CCTACTCACCACAGATAGCTCCTCGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_b05.g1 MSMg01no332_b05.g1 CHROMAT_FILE:
MSMg01no332_b05.g1 PHD_FILE: MSMg01no332_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:09 2005
         (672 letters)



>mm_chr14_80314413_80315483
          Length = 1071

 Score = 1261 bits (652), Expect = 0.0
 Identities = 667/672 (99%), Gaps = 1/672 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagacatagagtacagaactcaaggttgaaagcaatctaagaggtgcccgcccgggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagacatagagtacagaactcaaggttgaaagcaatctaagaggtgcccgcccgggcag 260

                                                                       
Query: 61  ggagagttgcaggaaaatgaatgactaagaaattcatgatccaagatgcctgggttgcag 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ggagagttgcaggaaaatgaatgactaagaaattcatgatccaagatggctgggttgcag 320

                                                                       
Query: 121 gagcgattgaggacacttagcaaattgaagacatttctcttttattcaccccttggcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcgattgaggacacttagcaaattgaagacatttctcttttattcaccccttggcttc 380

                                                                       
Query: 181 atttatttttcccagcaattgttttcccaggactgcaatgaaatgaacctcactcatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttatttttcccagcaattgttttcccaggactgcaatgaaatgaacctcactcatgat 440

                                                                       
Query: 241 ttgtctagtcataattagagtcttcctttttctcgttagacagtaatgtcaataatgact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtctagtcataattagagtcttcctttttctcgttagacagtaatgtcaataatgact 500

                                                                       
Query: 301 gcaaacatgttctctccttttaaaaaggcagaaggccagcatcattgtatctgtgagttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaacatgttctctccttttaaaaaggcagaaggccagcatcattgtatctgtgagttg 560

                                                                       
Query: 361 atgtcagatttgtaatgcagagatgcaagcttcacacgccatatgcgtgccaaatttcca 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtcagatttataatgcagagatgcaagcttcacacgccatatgcgtgccaaatttcca 620

                                                                       
Query: 421 tcaagactttggaaggcttaaactgtgcattaagaagggatcctgttttgtttctgatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaagactttggaaggcttaaactgtgcattaagaagggatcctgttttgtttctgatga 680

                                                                       
Query: 481 gtttttttttcgtcctattaaataaagaggacagaaaggccagacctctttgcctatcaa 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttttttt-cgtcctattaaataaagaggacagaaaggccagacctctttgcctatcaa 739

                                                                       
Query: 541 gactcatttcagggcaggcaagtagaaggaagacattcagagaagaggagggatattaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gactcatttcagggcaggcaagtagaaggaagacattcagagaagaggagggatattaat 799

                                                                       
Query: 601 ggatgttgagaggaagatccgggggcagggtagagcctggataggattatgagagaggga 660
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 800 ggatgttgagaggaagatccgggggcagggtagagtctggataggattatgagagaggga 859

                       
Query: 661 agtggacgtgaa 672
           |||||| |||||
Sbjct: 860 agtggatgtgaa 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space:   702382
Effective search space used:   702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)