BAC Information

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BAC

Clone NameMSMg01-332H07
Chromosome14 (Build37)
Map Location 25,823,151 - 25,823,811
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
Downstream geneLOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332H07.T7 (MSMg01no332_h07.b1)MSMg01-332H07.TJ (MSMg01no332_h07.g1)
ACCAG448485AG448486
length1,3001,329
length of high quality
(start - end)
---661 (121 - 781)
definitionCHROMAT_FILE: MSMg01no332_h07.b1 PHD_FILE: MSMg01no332_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:55 2005CHROMAT_FILE: MSMg01no332_h07.g1 PHD_FILE: MSMg01no332_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCGGGTTCGGGGNNCCTTTGCGCGCTATXXXXXXXXXXXXXXXXXX
XXXXCGCGGATTGCAGCTGTCTGGNGGGCCTACCTTACCTCCCCCTGANA
AGGGGANNTGTTAGAGGAGCCTAAAAAGGCTCTCTGGGGATGAGTGNTAT
AAGATAATTGGATGAGACCTGCATAGGCCTGTGTGACCTCCCTATGACAG
GCTTCCAGTGGCGAAAGGAGAAGGAAAGAACTGCTCCGACTATGGCCCGT
GCTGTGTATACTGTGGGCTGTGTTTCATGGAAGCTTACTTACAGATCATC
TTTTCTGTCTACTGCCTACACTTGTGTGGAGACTTCCTTATCTTTAGGAC
ATATATGGGCTGGAGACTGTTTATAACGACGTTCCAGTCCTGCTTCTGGG
ATAGTGATGAGTCTTTTTTTGAAGCGGATGTATGCACTGACCCTGATATC
TTGCTCCGGAAGACTCCGGGGGGTCCCTGTTGTCCCTCTTTGCCCTAGCC
TTTTTATGACATCTGGCATCTTGCTGTCTCCTCATAATACTCTCTGACGT
GGCTGATAGGATCCCATGTCTTCTGAACAATGCTGATCCTCTGAGGTGAA
TGGCGCTGATCAATGTTCCCGGCAGACTGCTGTCTCACTCTGATTTTGCC
GTCTGCGAGATCTGCCGAGTCTCCTTTTCAAGTTTCTCTAACTCCGCTTC
TGCTCCAAGAAAGTATTTGATCCTTTTGCTGCCCTTGATGAAAAGCGTTA
CTATTGCTGTCTTTGTCTAGAAGCGTCTATGCGTGAGGTTATTTTCATAT
TGAATGAGGCTCTTGAGTTTATAAAGAAGCCTATTGCATGACTGTTGTGT
GTGGGAGAAAACTTGCACTCATCGGGAGGGGGAGAGTATAGAACATTGTA
GNACATATGATATTAATTGTGGCGAAACCAAGTTAGGGGGGCTGGCGATT
AATATGAAATCTTAATCTTGAAGAAAGGTTCTATGTTCGTCGGAAAATTA
GGGGGGGTAGGGGGGGGGTTACTTCTCCAATTGCCGTTTATCAATTCTAT
AGGGGGGAACGAAAGAAAGAATATGTAGTCCCGCCCCACGGGCTTTTGTT
ATAGATATTCCTTTTCCCCAAAAAGAAGAAGGTTTGCGGAATGAATTGGA
CATCGAAACTTGGTGGTTGGGGGGGTTTTGTTAAAAGCCTTAGCATTGAA
AAAAAAAAGTTTGAGCTATGTGCCATCGGAAGTTNNNAAGACAACAAATT
TTTAAATTACTTTTGGGGTGTGGGAGAGTTGNNNNTACTGTTTGTGTTGT

CGCCTCTTTTNNACACATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGCCCCCCATATCTAGATAT
AGAGGCTTGCTAGACCTTCCAATGCTTGGACCAACTCATCCATGGGTAAA
CTTGGACTCTCTGGGAGGAGAAGCTTGAGGGTATGGCTCTGAATCTACTT
CCCAGATAACTCAAGTTGCAATACTCATGGGAACTCCTTGCCCTGCCTAC
GAGAAAAACTCAGTACAGGGTCATTGCTAGGGGCCAGCCCCGAGTGAGTG
GCAGGCCTTGTTCTTGGTGTTGTGCACAATGGTTGGCCCACAGAAGCCAG
TGGAAATTTGTTTTCCATTATTCTGAAAAGAGGTTAAAATGCATGGTGGG
TTTACTTTTTGGCCAAAGGTGACAGCAGGAGAGACTCCATTGATCCTTCT
GATGCCTTCTGACAGTTCAGGACATGAGGGAGGGCTTCAAGGACCTTCTC
CCCAGTGCCAGGATGCTAACAGCTTCCTGGGCTATCTGGCTAACTCCTGG
ACTCTACCCTGATATGTAAGGCAGATGTGGAGAAACCTCCAATTCCTGAC
CTTTGTTAATATGATTCTCTTTTAAAGACCGTGGGGAGAGCAGAGCTGGG
TCTGTTTTGATATACTAATCTTCTAGGTGTTTGGACCTCCAGCCTGACAT
TGTCCTTGATGTAGTTCACTGATGTGAGAGTTGTCTGTCTACTGAAGGCT
CTCCAGTACTCTATCTCCTGCTCTCGGATTGGGCCACCTCCATATCCCCT
TCTAGGATGGCATTTTGCCTGCTGTCCAGGCCTATTTAATAAAACGTCAC
TGTACCACCTGCCTACTACTCTATGCATTCAAAGAATCCCCCGAGGGTTC
ATTCATTAAATTCTTTTAACAAATGCCTTCCTTATAACCAATTTGGGTCA
CCTCCCCAAAAACCTAATGTTTACAAATATAATATTTATATTAATAGTCG
AACCAAATAAGTAATTTTTTTTTACCACCTTATAAGCTAAATTTAACCTA
CTTTGCTTTCCAAAAAAGCCCTCCAACAAATGACCTAAAGGGGTTGTGGG
GCTCCTGGGGCCCCCCCCTCCTGTTAAAGGACCTCTCCCCTCTTCAGTAA
TAACCAAAAAAATTTGGTCCCTGGCCATTCTCAATCTGGCTGCGCTAAGA
CCCCGTCTCTTTGCTTGTGAGAATAAATCTCCTTTATCCCTCCTTTATCT
CCTTTCGAGGAAATTCTCTTCTCTATGGCATACATGTATAATAATGATGC
GTCTCCTTACACCTCATCCCACCCCTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_h07.g1 MSMg01no332_h07.g1 CHROMAT_FILE:
MSMg01no332_h07.g1 PHD_FILE: MSMg01no332_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:55 2005
         (661 letters)



>mm_chr14_25822951_25824011
          Length = 1061

 Score = 1147 bits (593), Expect = 0.0
 Identities = 644/665 (96%), Gaps = 8/665 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgcttggaccaactcatccatgggtaaacttggactctctgggaggagaagcttgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgcttggaccaactcatccatgggtaaacttggactctctgggaggagaagcttgagg 260

                                                                       
Query: 61  gtatggctctgaatctacttcccagataactcaagttgcaatactcatgggaactccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatggctctgaatctacttcccagataactcaagttgcaatactcatgggaactccttg 320

                                                                       
Query: 121 ccctgcctacgagaaaaactcagtacagggtcattgctaggggccagccccgagtgagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgcctacgagaaaaactcagtacagggtcattgctaggggccagccccgagtgagtg 380

                                                                       
Query: 181 gcaggccttgttcttggtgttgtgcacaatggttggcccacagaagccagtggaaatttg 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gcaggccttgttcttggtgttttgcacaatggttggcccacagaagccagtggaaattta 440

                                                                       
Query: 241 ttttccattattctgaaaagaggttaaaatgcatggtgggtttac----tttttggccaa 296
           |||||||||||||||||||||||||||||||||||||||||||||    |    |||   
Sbjct: 441 ttttccattattctgaaaagaggttaaaatgcatggtgggtttacaccct----ggctgt 496

                                                                       
Query: 297 aggtgacagcaggagagactccattgatccttctgatgccttctgacagttcaggacatg 356
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 497 aggtgacagcaggagagactccattgatccttctgatggcttctgacagttcaggacatg 556

                                                                       
Query: 357 agggagggcttcaaggaccttctccccagtgccaggatgctaacagcttcctgggctatc 416
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 557 agggagggcttcaaggaccttctcctcagtgccaggatgctaacagcttcctgggctatc 616

                                                                       
Query: 417 tggctaactcctggactctaccctgatatgtaaggcagatgtggagaaacctccaattcc 476
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cggctacctcctggactctaccctgatatgtaaggcagatgtggagaaacctccaattcc 676

                                                                       
Query: 477 tgacctttgttaatatgattctcttttaaagaccgtggggagagcagagctgggtctgtt 536
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgacctttgttagtatgattctcttttaaagaccgtggggagagcagagctgggtctgtt 736

                                                                       
Query: 537 ttgatatactaatcttctaggtgtttggacctccagcctgacattgtccttgatgtagtt 596
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttggtatactaatctgctaggtgtttggacctccagcctgacattgtccttgatgtagtt 796

                                                                       
Query: 597 cactgatgtgagagttgtctgtctactgaaggctctccagtactctatctcctgctctcg 656
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 797 cactgatgtgagagttgtctgtctactgaagactctccagtactctatctcctgctctcg 856

                
Query: 657 gattg 661
           |||||
Sbjct: 857 gattg 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)